Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   CBI29_RS18165 Genome accession   NZ_CP021782
Coordinates   3718316..3719134 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain A85     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3713316..3724134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBI29_RS18150 (CBI29_03556) pilE 3713535..3713960 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  CBI29_RS18155 (CBI29_03557) pilY2 3713957..3714439 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  CBI29_RS18160 (CBI29_03558) pilY1 3714450..3718304 (-) 3855 WP_000768943.1 vWA domain-containing protein Machinery gene
  CBI29_RS18165 (CBI29_03559) pilX 3718316..3719134 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CBI29_RS18170 (CBI29_03560) pilW 3719131..3720132 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  CBI29_RS18175 (CBI29_03561) pilV 3720133..3720693 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  CBI29_RS18180 (CBI29_03562) fimU 3720687..3721160 (-) 474 WP_001214060.1 pilus assembly FimT family protein Machinery gene
  CBI29_RS18185 (CBI29_03563) ispH 3721330..3722280 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CBI29_RS18190 (CBI29_03564) gmk 3722403..3723032 (+) 630 WP_000015937.1 guanylate kinase -
  CBI29_RS18195 (CBI29_03565) rpoZ 3723105..3723383 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  CBI29_RS20425 - 3723422..3723552 (+) 131 Protein_3525 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=233524 CBI29_RS18165 WP_000149374.1 3718316..3719134(-) (pilX) [Acinetobacter baumannii strain A85]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=233524 CBI29_RS18165 WP_000149374.1 3718316..3719134(-) (pilX) [Acinetobacter baumannii strain A85]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment