Detailed information NTG0233526

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AX062_RS27940
• Genome accession: NZ_CP027390
• Coordinates: 5122741..5123733 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2015C-4944
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5117741..5128733

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AX062_RS27910	ispD	5117802..5118512 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AX062_RS27915	ispF	5118512..5118991 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AX062_RS27920	truD	5118988..5120037 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
AX062_RS27925	surE	5120018..5120779 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AX062_RS27930	pcm	5120773..5121399 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AX062_RS27935	nlpD	5121584..5122678 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AX062_RS27940	rpoS	5122741..5123733 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AX062_RS27945	-	5123854..5124261 (-)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
AX062_RS27950	-	5124408..5125001 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AX062_RS27955	-	5125001..5126428 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AX062_RS27960	-	5126439..5126675 (+)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AX062_RS27965	ygbN	5126714..5128078 (-)	1365	WP_032346223.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=233526 AX062_RS27940 WP_000081550.1 5122741..5123733(+) (rpoS) [Escherichia coli strain 2015C-4944]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=233526 AX062_RS27940 WP_000081550.1 5122741..5123733(+) (rpoS) [Escherichia coli strain 2015C-4944]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715