Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CBI29_RS17060 | Genome accession | NZ_CP021782 |
| Coordinates | 3508726..3509079 (+) | Length | 117 a.a. |
| NCBI ID | WP_002014678.1 | Uniprot ID | A0A0D5YEH0 |
| Organism | Acinetobacter baumannii strain A85 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3480109..3511445 | 3508726..3509079 | within | 0 |
Gene organization within MGE regions
Location: 3480109..3511445
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CBI29_RS16865 (CBI29_03305) | - | 3480109..3481107 (-) | 999 | WP_001284079.1 | phage portal protein | - |
| CBI29_RS16870 (CBI29_03306) | - | 3481107..3482894 (-) | 1788 | WP_031946558.1 | terminase large subunit domain-containing protein | - |
| CBI29_RS16875 (CBI29_03307) | - | 3483053..3483880 (+) | 828 | WP_000748563.1 | GPO family capsid scaffolding protein | - |
| CBI29_RS16880 (CBI29_03308) | - | 3483933..3484922 (+) | 990 | WP_001243259.1 | phage major capsid protein, P2 family | - |
| CBI29_RS16885 (CBI29_03309) | gpM | 3484933..3485679 (+) | 747 | WP_000950641.1 | phage terminase small subunit | - |
| CBI29_RS16890 (CBI29_03310) | - | 3485783..3486235 (+) | 453 | WP_000015691.1 | head completion/stabilization protein | - |
| CBI29_RS16895 (CBI29_03311) | - | 3486236..3486445 (+) | 210 | WP_000659474.1 | tail protein X | - |
| CBI29_RS16900 (CBI29_03312) | - | 3486454..3486804 (+) | 351 | WP_001114936.1 | putative holin | - |
| CBI29_RS16905 (CBI29_03313) | - | 3486801..3487070 (+) | 270 | WP_000571491.1 | phage holin family protein | - |
| CBI29_RS16910 (CBI29_03314) | - | 3487067..3487897 (+) | 831 | WP_000600982.1 | N-acetylmuramidase domain-containing protein | - |
| CBI29_RS16915 (CBI29_03315) | - | 3487894..3488421 (+) | 528 | WP_000742888.1 | phage tail protein | - |
| CBI29_RS16920 (CBI29_03316) | - | 3488418..3488867 (+) | 450 | WP_001059843.1 | phage virion morphogenesis protein | - |
| CBI29_RS16925 (CBI29_03317) | - | 3488940..3489572 (+) | 633 | WP_000990625.1 | phage baseplate assembly protein V | - |
| CBI29_RS16930 (CBI29_03318) | - | 3489569..3489916 (+) | 348 | WP_000987745.1 | GPW/gp25 family protein | - |
| CBI29_RS16935 (CBI29_03319) | - | 3489913..3490815 (+) | 903 | WP_000109738.1 | baseplate J/gp47 family protein | - |
| CBI29_RS16940 (CBI29_03320) | - | 3490815..3491420 (+) | 606 | WP_001050805.1 | phage tail protein I | - |
| CBI29_RS16945 (CBI29_03321) | - | 3491432..3493384 (+) | 1953 | WP_000729646.1 | phage tail protein | - |
| CBI29_RS16950 (CBI29_03322) | - | 3493534..3494709 (+) | 1176 | WP_000963361.1 | phage tail sheath protein | - |
| CBI29_RS16955 (CBI29_03323) | - | 3494722..3495240 (+) | 519 | WP_001207612.1 | phage major tail tube protein | - |
| CBI29_RS16960 (CBI29_03324) | - | 3495307..3495648 (+) | 342 | WP_001071615.1 | phage tail assembly protein | - |
| CBI29_RS16965 | - | 3495693..3495788 (+) | 96 | WP_236085181.1 | GpE family phage tail protein | - |
| CBI29_RS16970 (CBI29_03325) | - | 3495802..3498252 (+) | 2451 | WP_000774268.1 | phage tail tape measure protein | - |
| CBI29_RS16975 (CBI29_03326) | - | 3498258..3498698 (+) | 441 | WP_000979757.1 | phage tail protein | - |
| CBI29_RS16980 (CBI29_03327) | - | 3498699..3500012 (+) | 1314 | WP_000483061.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| CBI29_RS16985 (CBI29_03328) | - | 3500142..3500381 (+) | 240 | WP_000113725.1 | ogr/Delta-like zinc finger family protein | - |
| CBI29_RS16990 (CBI29_03329) | - | 3500378..3500578 (+) | 201 | WP_000130085.1 | TraR/DksA C4-type zinc finger protein | - |
| CBI29_RS17000 (CBI29_03330) | - | 3500894..3501175 (-) | 282 | WP_000713873.1 | hypothetical protein | - |
| CBI29_RS17005 (CBI29_03331) | - | 3501175..3502053 (-) | 879 | WP_000417952.1 | BRCT domain-containing protein | - |
| CBI29_RS17015 (CBI29_03332) | - | 3502363..3502557 (+) | 195 | WP_000696053.1 | hypothetical protein | - |
| CBI29_RS17020 (CBI29_03333) | - | 3502665..3503480 (+) | 816 | WP_001094886.1 | Rha family transcriptional regulator | - |
| CBI29_RS17025 (CBI29_03334) | - | 3503605..3503820 (+) | 216 | WP_000556351.1 | hypothetical protein | - |
| CBI29_RS17030 (CBI29_03335) | - | 3503865..3504206 (-) | 342 | WP_000786719.1 | helix-turn-helix domain-containing protein | - |
| CBI29_RS17035 (CBI29_03336) | - | 3504299..3504490 (+) | 192 | WP_001043481.1 | hypothetical protein | - |
| CBI29_RS17040 (CBI29_03337) | - | 3504584..3507322 (+) | 2739 | WP_002014340.1 | toprim domain-containing protein | - |
| CBI29_RS17045 (CBI29_03338) | - | 3507319..3507651 (+) | 333 | WP_000632296.1 | hypothetical protein | - |
| CBI29_RS17050 (CBI29_03339) | - | 3507717..3508268 (+) | 552 | WP_001178668.1 | hypothetical protein | - |
| CBI29_RS20415 (CBI29_03340) | - | 3508258..3508428 (+) | 171 | WP_106908016.1 | hypothetical protein | - |
| CBI29_RS17055 (CBI29_03341) | - | 3508421..3508738 (+) | 318 | WP_000049658.1 | hypothetical protein | - |
| CBI29_RS17060 (CBI29_03342) | ssb | 3508726..3509079 (+) | 354 | WP_002014678.1 | single-stranded DNA-binding protein | Machinery gene |
| CBI29_RS17065 (CBI29_03343) | - | 3509089..3509826 (+) | 738 | WP_000125747.1 | 3'-5' exonuclease | - |
| CBI29_RS17070 (CBI29_03344) | - | 3509836..3510057 (+) | 222 | WP_000424605.1 | hypothetical protein | - |
| CBI29_RS17075 (CBI29_03345) | - | 3510054..3510350 (+) | 297 | WP_000218943.1 | hypothetical protein | - |
| CBI29_RS17080 (CBI29_03346) | - | 3510378..3511445 (-) | 1068 | WP_000107854.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 117 a.a. Molecular weight: 13365.13 Da Isoelectric Point: 9.7939
>NTDB_id=233517 CBI29_RS17060 WP_002014678.1 3508726..3509079(+) (ssb) [Acinetobacter baumannii strain A85]
MRGINKVILVGMLGANPIPKQFQNGGSYAQFSIATSEKYQDKRTGDWIENTEWHRIVAHNRLGEIACQFLKKGSKVYIEG
SLHTRKWTDQNNQERYVTEVRAITFQSLDSLPQANPV
MRGINKVILVGMLGANPIPKQFQNGGSYAQFSIATSEKYQDKRTGDWIENTEWHRIVAHNRLGEIACQFLKKGSKVYIEG
SLHTRKWTDQNNQERYVTEVRAITFQSLDSLPQANPV
Nucleotide
Download Length: 354 bp
>NTDB_id=233517 CBI29_RS17060 WP_002014678.1 3508726..3509079(+) (ssb) [Acinetobacter baumannii strain A85]
ATGCGCGGAATAAATAAAGTGATCTTGGTTGGAATGCTTGGTGCTAACCCAATTCCTAAACAATTTCAAAACGGTGGCTC
CTATGCTCAGTTTTCAATTGCCACTTCAGAAAAATACCAGGACAAACGCACTGGAGATTGGATTGAAAATACTGAGTGGC
ATCGGATTGTGGCTCACAACCGCCTAGGTGAAATTGCCTGTCAATTTCTCAAAAAAGGTTCAAAAGTTTATATCGAAGGC
TCATTACATACCCGGAAATGGACTGACCAAAATAATCAAGAACGTTACGTAACTGAAGTTAGAGCCATTACATTTCAATC
GCTCGATAGCTTGCCACAAGCAAACCCGGTTTAA
ATGCGCGGAATAAATAAAGTGATCTTGGTTGGAATGCTTGGTGCTAACCCAATTCCTAAACAATTTCAAAACGGTGGCTC
CTATGCTCAGTTTTCAATTGCCACTTCAGAAAAATACCAGGACAAACGCACTGGAGATTGGATTGAAAATACTGAGTGGC
ATCGGATTGTGGCTCACAACCGCCTAGGTGAAATTGCCTGTCAATTTCTCAAAAAAGGTTCAAAAGTTTATATCGAAGGC
TCATTACATACCCGGAAATGGACTGACCAAAATAATCAAGAACGTTACGTAACTGAAGTTAGAGCCATTACATTTCAATC
GCTCGATAGCTTGCCACAAGCAAACCCGGTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
55.455 |
94.017 |
0.521 |
| ssb | Vibrio cholerae strain A1552 |
54.545 |
84.615 |
0.462 |
| ssb | Neisseria gonorrhoeae MS11 |
42.857 |
89.744 |
0.385 |
| ssb | Neisseria meningitidis MC58 |
42.857 |
89.744 |
0.385 |