Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CDH83_RS08050 | Genome accession | NZ_CP021770 |
| Coordinates | 1567375..1567866 (-) | Length | 163 a.a. |
| NCBI ID | WP_000609585.1 | Uniprot ID | A0AAV3JH34 |
| Organism | Streptococcus agalactiae strain B508 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1562375..1572866
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDH83_RS08035 (CDH83_07975) | - | 1565281..1565952 (-) | 672 | WP_000174846.1 | DUF1129 family protein | - |
| CDH83_RS08040 (CDH83_07980) | - | 1565977..1566921 (-) | 945 | WP_000812121.1 | magnesium transporter CorA family protein | - |
| CDH83_RS08045 (CDH83_07985) | rpsR | 1567091..1567330 (-) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| CDH83_RS08050 (CDH83_07990) | ssbA | 1567375..1567866 (-) | 492 | WP_000609585.1 | single-stranded DNA-binding protein | Machinery gene |
| CDH83_RS08055 (CDH83_07995) | rpsF | 1567878..1568165 (-) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| CDH83_RS08060 (CDH83_08000) | mutY | 1569229..1570383 (+) | 1155 | WP_161512236.1 | A/G-specific adenine glycosylase | - |
| CDH83_RS08065 (CDH83_08005) | - | 1570560..1571153 (+) | 594 | WP_000402394.1 | helix-turn-helix transcriptional regulator | - |
| CDH83_RS08070 (CDH83_08010) | trxA | 1571199..1571513 (-) | 315 | WP_001162959.1 | thioredoxin | - |
| CDH83_RS08075 (CDH83_08015) | - | 1571594..1572094 (-) | 501 | WP_000446812.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18165.81 Da Isoelectric Point: 4.9119
>NTDB_id=233208 CDH83_RS08050 WP_000609585.1 1567375..1567866(-) (ssbA) [Streptococcus agalactiae strain B508]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=233208 CDH83_RS08050 WP_000609585.1 1567375..1567866(-) (ssbA) [Streptococcus agalactiae strain B508]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.714 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.064 |
100 |
0.62 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |