Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CDH85_RS04965 | Genome accession | NZ_CP021769 |
| Coordinates | 897041..897532 (+) | Length | 163 a.a. |
| NCBI ID | WP_000609585.1 | Uniprot ID | A0AAV3JH34 |
| Organism | Streptococcus agalactiae strain B509 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 892041..902532
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDH85_RS04940 (CDH85_04910) | - | 892816..893316 (+) | 501 | WP_000446812.1 | phosphatase PAP2 family protein | - |
| CDH85_RS04945 (CDH85_04915) | trxA | 893397..893711 (+) | 315 | WP_001162959.1 | thioredoxin | - |
| CDH85_RS04950 (CDH85_04920) | - | 893757..894350 (-) | 594 | WP_000402394.1 | helix-turn-helix transcriptional regulator | - |
| CDH85_RS04955 (CDH85_04925) | mutY | 894527..895681 (-) | 1155 | WP_000566235.1 | A/G-specific adenine glycosylase | - |
| CDH85_RS04960 (CDH85_04930) | rpsF | 896745..897029 (+) | 285 | WP_112435773.1 | 30S ribosomal protein S6 | - |
| CDH85_RS04965 (CDH85_04935) | ssbA | 897041..897532 (+) | 492 | WP_000609585.1 | single-stranded DNA-binding protein | Machinery gene |
| CDH85_RS04970 (CDH85_04940) | rpsR | 897577..897816 (+) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| CDH85_RS04975 (CDH85_04945) | - | 897986..898930 (+) | 945 | WP_000812121.1 | magnesium transporter CorA family protein | - |
| CDH85_RS04980 (CDH85_04950) | - | 898955..899626 (+) | 672 | WP_000174846.1 | DUF1129 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18165.81 Da Isoelectric Point: 4.9119
>NTDB_id=233152 CDH85_RS04965 WP_000609585.1 897041..897532(+) (ssbA) [Streptococcus agalactiae strain B509]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=233152 CDH85_RS04965 WP_000609585.1 897041..897532(+) (ssbA) [Streptococcus agalactiae strain B509]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.714 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.064 |
100 |
0.62 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |