Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   CCR98_RS16845 Genome accession   NZ_CP021768
Coordinates   3593736..3594794 (-) Length   352 a.a.
NCBI ID   WP_014038321.1    Uniprot ID   A0AAP7J1E4
Organism   Stenotrophomonas sp. WZN-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3588736..3599794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCR98_RS16825 (CCR98_16830) - 3589671..3591644 (-) 1974 WP_087923499.1 type IV pilus secretin PilQ family protein -
  CCR98_RS16830 (CCR98_16835) - 3591666..3592199 (-) 534 WP_005418914.1 pilus assembly protein PilP -
  CCR98_RS16835 (CCR98_16840) pilO 3592199..3592855 (-) 657 WP_087923500.1 type 4a pilus biogenesis protein PilO -
  CCR98_RS16840 (CCR98_16845) - 3592852..3593736 (-) 885 WP_087923501.1 PilN domain-containing protein -
  CCR98_RS16845 (CCR98_16850) pilM 3593736..3594794 (-) 1059 WP_014038321.1 pilus assembly protein PilM Machinery gene
  CCR98_RS16850 (CCR98_16855) - 3595014..3597437 (+) 2424 WP_087923502.1 penicillin-binding protein 1A -
  CCR98_RS16855 (CCR98_16860) - 3597961..3598605 (+) 645 WP_012511978.1 hypothetical protein -
  CCR98_RS16860 (CCR98_16865) - 3598742..3599485 (-) 744 WP_087923503.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37741.35 Da        Isoelectric Point: 4.4006

>NTDB_id=233122 CCR98_RS16845 WP_014038321.1 3593736..3594794(-) (pilM) [Stenotrophomonas sp. WZN-1]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPADLDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGSIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=233122 CCR98_RS16845 WP_014038321.1 3593736..3594794(-) (pilM) [Stenotrophomonas sp. WZN-1]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTTGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGCGGCAATCGTTTCCGCGTGGAACATTATGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTGGAGAAGAACATCG
TTGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGGGCGATGAACCGCTCAGGCAGCAAGGCCAAACTGGCCGCTGCCGCC
GTCGCGGGGTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGATCTCGACGAAAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTATCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGTCGATCCCGAACA
ATCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAATGTCGAGCTGCGCCAGTCCGCGCTGGAACTCGGT
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTACGCCCTGGTCGCCAGCGAGCTGCCGGT
GTCCATCGACGGCGTGGTCGCGCTGGTCGACATCGGCGCCACCATGACCACCCTCAATGTCCTGCGCGGCGGCCGTAGCC
TCTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGTTATGGCCTGAGCTACGAGGAA
GCCGGGCTGGCCAAGCGCCAGGGCGGCCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCAGGCAGCGAATTCAACCGCGTCGATCACATCGTGCTGGCCGGCG
GTTGCGCCGTGTTGGGTGGCCTGCCGGAGATGGTCGAGGAACAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTGAACGCGCATGCGTTGGCCCAGGACGCCCCCGCGCTGATGATCGCGACCGGTCTGGC
GCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.42

100

0.514
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

50.284

100

0.503
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477

Multiple sequence alignment