Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CDA09_RS19395 Genome accession   NZ_CP021731
Coordinates   4180795..4181277 (-) Length   160 a.a.
NCBI ID   WP_121430147.1    Uniprot ID   -
Organism   Azoarcus sp. DN11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4175795..4186277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDA09_RS19385 (CDA09_19360) - 4175891..4178215 (-) 2325 WP_121430145.1 hydantoinase B/oxoprolinase family protein -
  CDA09_RS19390 (CDA09_19365) - 4178227..4180380 (-) 2154 WP_121430146.1 hydantoinase/oxoprolinase family protein -
  CDA09_RS19395 (CDA09_19370) ssb 4180795..4181277 (-) 483 WP_121430147.1 single-stranded DNA-binding protein Machinery gene
  CDA09_RS19400 (CDA09_19375) - 4181302..4182486 (-) 1185 WP_121430148.1 MFS transporter -
  CDA09_RS19405 (CDA09_19380) uvrA 4182622..4185456 (+) 2835 WP_121430149.1 excinuclease ABC subunit UvrA -
  CDA09_RS19410 (CDA09_19385) - 4185567..4185866 (+) 300 WP_121430150.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17467.40 Da        Isoelectric Point: 5.9492

>NTDB_id=232930 CDA09_RS19395 WP_121430147.1 4180795..4181277(-) (ssb) [Azoarcus sp. DN11]
MASLNKVILIGNLGRDPETRYAPSGDAICNITVATTETWKDKQSGERKEATEWHRVVFFGRLAEIAAQYLRKGSQVYVEG
RLQTRKWQDKDGQDRYTTEIRGDEMKMLGSRQGGGGDAPMGGYEAPSAPARPAPQQAPAQKAPSQSGSGGFGDFDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=232930 CDA09_RS19395 WP_121430147.1 4180795..4181277(-) (ssb) [Azoarcus sp. DN11]
ATGGCTTCCCTGAACAAAGTCATCCTGATCGGCAACCTGGGGCGCGATCCGGAAACCCGCTACGCGCCGAGCGGTGACGC
GATCTGCAACATCACCGTGGCGACCACCGAAACGTGGAAGGACAAGCAAAGCGGTGAGCGCAAGGAAGCGACCGAGTGGC
ACCGCGTGGTGTTCTTCGGCCGCCTCGCGGAGATCGCCGCGCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAGGGG
CGCCTGCAGACGCGCAAATGGCAGGACAAGGACGGCCAGGACCGCTACACGACCGAGATCCGCGGTGACGAAATGAAGAT
GCTGGGGTCGCGCCAGGGCGGGGGTGGCGACGCACCGATGGGCGGTTACGAGGCGCCTTCCGCGCCCGCCCGCCCGGCGC
CGCAGCAGGCGCCGGCCCAGAAGGCGCCGAGCCAGTCGGGGAGTGGCGGATTCGGGGATTTCGACGACGATATCCCGTTC
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.497

100

0.625
  ssb Glaesserella parasuis strain SC1401

51.892

100

0.6
  ssb Neisseria gonorrhoeae MS11

50.562

100

0.563
  ssb Neisseria meningitidis MC58

51.149

100

0.556

Multiple sequence alignment