Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   CCD80_RS03095 Genome accession   NZ_CP021725
Coordinates   531712..532185 (+) Length   157 a.a.
NCBI ID   WP_002230430.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 95-134     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 526712..537185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD80_RS03070 (CCD80_03100) dnaB 527159..528565 (+) 1407 WP_002219448.1 replicative DNA helicase -
  CCD80_RS03075 (CCD80_03105) pilH 528867..529535 (+) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CCD80_RS03080 (CCD80_03110) pilV 529565..530185 (+) 621 WP_149323756.1 type IV pilus modification protein PilV Machinery gene
  CCD80_RS03085 (CCD80_03115) pilJ 530182..531135 (+) 954 WP_002259883.1 PilW family protein Machinery gene
  CCD80_RS03090 (CCD80_03120) pilK 531114..531707 (+) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCD80_RS03095 (CCD80_03125) pilX 531712..532185 (+) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  CCD80_RS03100 (CCD80_03130) - 532678..533105 (-) 428 Protein_529 AzlC family ABC transporter permease -
  CCD80_RS03105 (CCD80_03135) dut 533251..533700 (+) 450 Protein_530 dUTP diphosphatase -
  CCD80_RS03110 (CCD80_03140) dapC 533778..534959 (+) 1182 Protein_531 succinyldiaminopimelate transaminase -
  CCD80_RS03115 (CCD80_03145) yaaA 535122..535900 (+) 779 Protein_532 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17472.18 Da        Isoelectric Point: 9.1946

>NTDB_id=232857 CCD80_RS03095 WP_002230430.1 531712..532185(+) (pilX) [Neisseria meningitidis strain 95-134]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=232857 CCD80_RS03095 WP_002230430.1 531712..532185(+) (pilX) [Neisseria meningitidis strain 95-134]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAAGCCCATTTGGAGACCTTGTCCTCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

98.089

100

0.981
  pilL Neisseria gonorrhoeae MS11

87.261

100

0.873

Multiple sequence alignment