Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   CCD80_RS03090 Genome accession   NZ_CP021725
Coordinates   531114..531707 (+) Length   197 a.a.
NCBI ID   WP_002229321.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 95-134     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 526114..536707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD80_RS03060 (CCD80_03090) - 526409..526996 (-) 588 WP_002222659.1 superoxide dismutase -
  CCD80_RS03070 (CCD80_03100) dnaB 527159..528565 (+) 1407 WP_002219448.1 replicative DNA helicase -
  CCD80_RS03075 (CCD80_03105) pilH 528867..529535 (+) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CCD80_RS03080 (CCD80_03110) pilV 529565..530185 (+) 621 WP_149323756.1 type IV pilus modification protein PilV Machinery gene
  CCD80_RS03085 (CCD80_03115) pilJ 530182..531135 (+) 954 WP_002259883.1 PilW family protein Machinery gene
  CCD80_RS03090 (CCD80_03120) pilK 531114..531707 (+) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCD80_RS03095 (CCD80_03125) pilX 531712..532185 (+) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  CCD80_RS03100 (CCD80_03130) - 532678..533105 (-) 428 Protein_529 AzlC family ABC transporter permease -
  CCD80_RS03105 (CCD80_03135) dut 533251..533700 (+) 450 Protein_530 dUTP diphosphatase -
  CCD80_RS03110 (CCD80_03140) dapC 533778..534959 (+) 1182 Protein_531 succinyldiaminopimelate transaminase -
  CCD80_RS03115 (CCD80_03145) yaaA 535122..535900 (+) 779 Protein_532 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21655.53 Da        Isoelectric Point: 7.5809

>NTDB_id=232856 CCD80_RS03090 WP_002229321.1 531114..531707(+) (pilK) [Neisseria meningitidis strain 95-134]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCPANSTNLCIDNKGTKYKKGTQSVSKMPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=232856 CCD80_RS03090 WP_002229321.1 531114..531707(+) (pilK) [Neisseria meningitidis strain 95-134]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTACCA
ACCTGTGCATTGACAATAAAGGGACGAAATATAAGAAAGGCACGCAAAGCGTCAGCAAAATGCCACGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.129

100

0.893

Multiple sequence alignment