Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CCX87_RS18475 Genome accession   NZ_CP021648
Coordinates   3982429..3982977 (-) Length   182 a.a.
NCBI ID   WP_087748003.1    Uniprot ID   -
Organism   Acidovorax sp. T1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3977429..3987977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX87_RS18465 - 3977659..3980838 (-) 3180 WP_087748001.1 DEAD/DEAH box helicase -
  CCX87_RS18470 mnmA 3981087..3982232 (+) 1146 WP_087748002.1 tRNA 2-thiouridine(34) synthase MnmA -
  CCX87_RS18475 ssb 3982429..3982977 (-) 549 WP_087748003.1 single-stranded DNA-binding protein Machinery gene
  CCX87_RS18480 - 3983095..3984282 (-) 1188 WP_087748004.1 MFS transporter -
  CCX87_RS18485 uvrA 3984570..3987572 (+) 3003 WP_232476612.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19561.77 Da        Isoelectric Point: 6.4854

>NTDB_id=232260 CCX87_RS18475 WP_087748003.1 3982429..3982977(-) (ssb) [Acidovorax sp. T1]
MASINKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWKDKQTGEMKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQAGVEKYSTEIRADQMQMLGGRQGMGGQGGGHDDGGGYGGDSGGGYDQAPRRAAPAPMQQRPVAPAPRPAP
APAAQAPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=232260 CCX87_RS18475 WP_087748003.1 3982429..3982977(-) (ssb) [Acidovorax sp. T1]
ATGGCATCCATCAACAAAGTCATCATCGTCGGCAACCTGGGCCGCGACCCGGAAATGCGCACCTTCCCCAGCGGCGACCA
GGTGGCCAACGTGACGATTGCCACCACCGATCGCTGGAAAGACAAGCAGACCGGCGAAATGAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTGGGCCAATACCTGCGCAAGGGCTCGCAGGTGTACGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCGGCGTGGAGAAATACAGCACCGAAATCCGCGCCGACCAAATGCAGAT
GCTGGGCGGCCGCCAAGGCATGGGCGGCCAAGGTGGCGGCCATGACGACGGCGGCGGCTATGGCGGAGACTCCGGCGGCG
GCTACGACCAGGCCCCGCGCCGCGCCGCGCCAGCACCCATGCAACAACGCCCTGTAGCACCCGCCCCCCGGCCCGCGCCG
GCCCCAGCGGCGCAGGCACCGCGCGCTGCCTCGGGCTTTGATGACATGGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.053

100

0.533
  ssb Glaesserella parasuis strain SC1401

50.259

100

0.533
  ssb Neisseria gonorrhoeae MS11

44.199

99.451

0.44
  ssb Neisseria meningitidis MC58

40.984

100

0.412

Multiple sequence alignment