Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CCZ28_RS11550 Genome accession   NZ_CP021645
Coordinates   2595131..2596471 (+) Length   446 a.a.
NCBI ID   WP_140218145.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain CS51     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2590131..2601471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ28_RS11530 (CCZ28_11505) - 2590440..2591465 (+) 1026 WP_140218137.1 outer membrane protein assembly factor BamD -
  CCZ28_RS11535 (CCZ28_11510) - 2591577..2593199 (-) 1623 WP_140218139.1 NAD+ synthase -
  CCZ28_RS11540 (CCZ28_11515) - 2593334..2593582 (+) 249 WP_140218141.1 PP0621 family protein -
  CCZ28_RS11545 (CCZ28_11520) pilS 2593566..2595128 (+) 1563 WP_140218143.1 PAS domain-containing sensor histidine kinase Regulator
  CCZ28_RS11550 (CCZ28_11525) pilR 2595131..2596471 (+) 1341 WP_140218145.1 sigma-54 dependent transcriptional regulator Regulator
  CCZ28_RS11555 (CCZ28_11530) thiO 2596472..2597575 (-) 1104 WP_140218147.1 glycine oxidase ThiO -
  CCZ28_RS11560 (CCZ28_11535) - 2597673..2598200 (+) 528 WP_167509297.1 GspH/FimT family pseudopilin -
  CCZ28_RS11565 (CCZ28_11540) - 2598291..2598785 (+) 495 WP_240795265.1 GspH/FimT family pseudopilin -
  CCZ28_RS11570 (CCZ28_11545) pilV 2598782..2599285 (+) 504 WP_140218151.1 type IV pilus modification protein PilV -
  CCZ28_RS11575 (CCZ28_11550) - 2599282..2600310 (+) 1029 WP_140221331.1 PilW family protein -
  CCZ28_RS11580 (CCZ28_11555) - 2600307..2600777 (+) 471 WP_140218153.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48924.19 Da        Isoelectric Point: 5.6335

>NTDB_id=232201 CCZ28_RS11550 WP_140218145.1 2595131..2596471(+) (pilR) [Pseudomonas oryzihabitans strain CS51]
MARQKVLIVDDEPDIRELLEITLGRMKLDTASAKNIADARAILERESFDLCLTDMRLPDGSGLELINFIQQRLPQLPVAM
ITAFGSLETAVQALKAGAFDYLTKPVDLPRLRELVGTALRLSGPATPATGSSETQLLGESPPMRALRTQIAKLARSQAPV
YISGESGSGKERVARLIHEQGPRAGKPFVPVNCGAIPSELMESEFFGHRKGSFTGAIEDKQGLFQAAQGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRAVGSQQEISLDVRILSATHKDLAAEVAAGTFRQDLYYRLNVIELQVPALRERREDIGALANY
MLERLARDSGLAAATLGEDALAKLKSYRFPGNVRELENMLERAYTLCEGDVIRPNDLRLADAPAATAAGEASLANIANLE
DHLESIERQLIMQALEETRWNRTAAAERLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=232201 CCZ28_RS11550 WP_140218145.1 2595131..2596471(+) (pilR) [Pseudomonas oryzihabitans strain CS51]
ATGGCCAGACAGAAAGTCCTGATCGTCGACGATGAGCCCGATATCCGCGAACTCTTGGAAATCACCCTGGGACGGATGAA
ACTCGATACCGCCAGCGCCAAGAACATCGCCGATGCGCGTGCCATCCTCGAACGGGAAAGCTTCGACCTCTGCCTGACCG
ACATGCGCCTGCCCGATGGCTCGGGCCTCGAACTGATCAACTTCATCCAGCAGCGACTGCCGCAACTGCCAGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGAAACCGCCGTGCAGGCGCTGAAAGCCGGCGCCTTCGACTACCTCACCAAACCCGTGGA
TCTGCCGCGCCTGCGCGAATTGGTCGGTACCGCCCTGCGCCTGTCCGGCCCCGCCACGCCAGCAACCGGCTCCAGCGAAA
CCCAACTACTGGGCGAATCGCCCCCCATGCGCGCCCTGCGCACCCAGATCGCCAAACTCGCCCGCAGCCAGGCACCGGTC
TATATCAGTGGCGAATCGGGCAGCGGCAAGGAACGCGTGGCCCGCTTGATCCACGAACAGGGCCCGCGCGCCGGCAAGCC
GTTCGTGCCGGTCAACTGCGGCGCGATTCCTTCGGAGTTGATGGAAAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
CCGGCGCCATCGAAGACAAGCAGGGGCTGTTCCAGGCGGCCCAGGGCGGCACCCTGTTCCTCGACGAGGTGGCCGACCTG
CCGCTGCCGATGCAGGTCAAGCTGTTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCGGTGGGCAGCCAACAGGAGATCAG
CCTGGACGTCCGTATCCTCAGCGCCACGCACAAGGACCTCGCCGCCGAGGTGGCGGCCGGCACCTTCCGCCAGGATCTCT
ACTATCGGCTCAACGTCATCGAACTACAGGTGCCGGCCCTACGCGAGCGCCGCGAGGACATCGGCGCGCTGGCCAACTAC
ATGCTCGAACGCCTGGCACGCGATTCTGGCCTGGCTGCCGCGACGCTGGGTGAGGATGCCCTGGCCAAACTCAAGAGCTA
CCGCTTCCCGGGCAACGTCCGGGAACTGGAGAACATGCTGGAACGCGCCTACACCCTCTGCGAAGGCGATGTCATCCGCC
CGAACGACCTGCGCCTGGCCGATGCGCCCGCTGCCACGGCCGCCGGCGAGGCGAGTCTGGCCAATATCGCCAACCTCGAG
GATCACCTGGAATCCATCGAGCGCCAGCTGATCATGCAGGCACTCGAAGAGACGCGCTGGAACCGCACCGCCGCAGCGGA
ACGCCTGGGCCTGTCGTTCCGCTCGATGCGCTACCGCCTGAAGAAGCTCGGTATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-303)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.493

100

0.805
  pilR Acinetobacter baumannii strain A118

48.069

100

0.502
  luxO Vibrio cholerae strain A1552

37.557

99.103

0.372

Multiple sequence alignment