Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CCZ28_RS11545 Genome accession   NZ_CP021645
Coordinates   2593566..2595128 (+) Length   520 a.a.
NCBI ID   WP_140218143.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain CS51     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2588566..2600128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ28_RS11525 (CCZ28_11500) rluD 2589292..2590251 (-) 960 WP_058779643.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CCZ28_RS11530 (CCZ28_11505) - 2590440..2591465 (+) 1026 WP_140218137.1 outer membrane protein assembly factor BamD -
  CCZ28_RS11535 (CCZ28_11510) - 2591577..2593199 (-) 1623 WP_140218139.1 NAD+ synthase -
  CCZ28_RS11540 (CCZ28_11515) - 2593334..2593582 (+) 249 WP_140218141.1 PP0621 family protein -
  CCZ28_RS11545 (CCZ28_11520) pilS 2593566..2595128 (+) 1563 WP_140218143.1 PAS domain-containing sensor histidine kinase Regulator
  CCZ28_RS11550 (CCZ28_11525) pilR 2595131..2596471 (+) 1341 WP_140218145.1 sigma-54 dependent transcriptional regulator Regulator
  CCZ28_RS11555 (CCZ28_11530) thiO 2596472..2597575 (-) 1104 WP_140218147.1 glycine oxidase ThiO -
  CCZ28_RS11560 (CCZ28_11535) - 2597673..2598200 (+) 528 WP_167509297.1 GspH/FimT family pseudopilin -
  CCZ28_RS11565 (CCZ28_11540) - 2598291..2598785 (+) 495 WP_240795265.1 GspH/FimT family pseudopilin -
  CCZ28_RS11570 (CCZ28_11545) pilV 2598782..2599285 (+) 504 WP_140218151.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 57066.64 Da        Isoelectric Point: 6.8236

>NTDB_id=232200 CCZ28_RS11545 WP_140218143.1 2593566..2595128(+) (pilS) [Pseudomonas oryzihabitans strain CS51]
MSAETDPDILRADAVLRLYHLYRIVIGLALVLLISSDLDQHWLRTVDGQLFRQASWAYLAANTVLAVCHQPLRQHAFTLA
LIDIIALGGLFFLAGGIASGMGSLLVVTVGVSNVLIRGRRGLLIAALAAIALLLATIYLDLRRGDGGSGYVQAAGLGTLC
FATALLVQGLVRRLLDSQALAETRATTVAELEALNALILERMRTGILVFDAEYQVLLANPAARRLLGVDDDGSITPLSSV
LAQRLEEWERNPSIRPAALRAYANGPLLQPTFARLQQGEGERVLTFLEDVSRIAQQAQQLKLASLGRLTAGIAHEIRNPL
GAISHAAQLLQESEELTTPDRRLAQIIQDQSQRMNRVVENVLQLSRRRQSAPQLIDLRYWAHRFAGELRPTLPADQRIHV
KAEPGTLQTHMDPHQLGQILTNLVQNGLRYSVTGQVWLSVYREPDSDLPILDVVDDGPGVAAEQLDHLFEPFFTTENKGT
GLGLYISRELCESNQARLGYHPLASGSCFRITFAHPRTMS

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=232200 CCZ28_RS11545 WP_140218143.1 2593566..2595128(+) (pilS) [Pseudomonas oryzihabitans strain CS51]
ATGAGCGCCGAGACTGATCCCGATATCCTCAGAGCCGACGCGGTCCTGCGGCTCTATCACCTCTATCGCATCGTCATCGG
GCTGGCGCTGGTCCTGCTGATCTCCAGCGACCTGGACCAGCACTGGCTGCGCACCGTGGATGGCCAGCTGTTCCGCCAGG
CCAGTTGGGCCTATCTCGCCGCCAACACGGTATTGGCTGTCTGTCACCAACCGCTACGCCAACATGCCTTCACCCTGGCG
TTGATCGACATCATCGCCCTGGGTGGCCTGTTCTTCCTGGCCGGCGGTATCGCCAGCGGCATGGGTAGCCTGCTGGTGGT
AACGGTGGGCGTGTCCAACGTCCTGATCCGAGGTCGCCGCGGCCTGTTGATCGCCGCCCTGGCCGCGATCGCCTTGCTGC
TCGCCACCATCTACCTGGACCTGCGCCGCGGCGACGGCGGCAGTGGCTACGTCCAGGCTGCGGGTCTGGGCACCCTGTGC
TTCGCCACGGCGCTGCTGGTGCAGGGCCTGGTCCGGCGACTGCTGGACAGCCAGGCACTGGCCGAAACCCGCGCCACTAC
CGTAGCCGAGCTGGAAGCGCTGAACGCTCTCATCCTCGAACGGATGCGTACCGGCATCCTGGTGTTCGATGCCGAATACC
AGGTGCTGCTCGCCAATCCAGCGGCACGCCGCCTGTTGGGCGTGGACGATGACGGCAGCATCACGCCCCTGAGTAGCGTC
CTGGCCCAACGCCTGGAGGAATGGGAGCGCAACCCCAGCATCCGCCCGGCAGCGTTACGCGCCTACGCCAATGGTCCGTT
GTTGCAGCCAACCTTCGCGCGCCTGCAACAGGGCGAGGGTGAGCGCGTGCTGACCTTTCTCGAAGACGTCTCGCGGATTG
CCCAACAGGCGCAACAACTCAAGCTCGCCTCCCTCGGCCGCCTCACCGCCGGTATTGCCCACGAGATCCGCAACCCGCTG
GGCGCCATCAGCCACGCGGCGCAACTGCTCCAGGAGTCCGAGGAGTTGACCACTCCGGATCGCCGCCTGGCGCAGATCAT
CCAGGATCAATCGCAGCGGATGAACCGGGTGGTGGAGAACGTCCTGCAACTTTCGCGGCGGCGCCAATCGGCGCCCCAAC
TGATCGACCTGCGCTACTGGGCCCATCGGTTCGCCGGTGAGTTGCGCCCTACCCTGCCCGCCGACCAGAGGATCCACGTC
AAGGCCGAACCCGGCACCTTGCAGACCCACATGGATCCCCACCAGTTGGGGCAGATCCTCACCAACCTGGTGCAGAACGG
CCTGCGCTACAGCGTTACCGGTCAGGTCTGGCTCAGCGTGTACCGCGAACCGGACAGCGACCTGCCCATCCTCGACGTGG
TCGATGACGGCCCCGGGGTCGCCGCCGAGCAACTCGACCACCTGTTCGAACCTTTCTTCACCACGGAGAACAAGGGCACC
GGCCTGGGGTTGTACATTTCCCGTGAGCTTTGCGAAAGCAACCAAGCCAGACTTGGCTATCATCCCTTGGCGAGCGGCAG
CTGTTTCCGCATCACCTTCGCCCATCCCCGCACAATGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(304-368)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(412-513)

PAS domain (PAS_8)

(198-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

99.038

0.594

Multiple sequence alignment