Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B4U42_RS06815 Genome accession   NZ_CP021644
Coordinates   1250780..1251319 (-) Length   179 a.a.
NCBI ID   WP_005714441.1    Uniprot ID   -
Organism   Glaesserella parasuis 29755     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1245780..1256319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U42_RS06785 (B4U42_06635) - 1245916..1246194 (+) 279 WP_005712614.1 type II toxin-antitoxin system RelE/ParE family toxin -
  B4U42_RS06790 (B4U42_06640) - 1246205..1246477 (+) 273 WP_005712616.1 HigA family addiction module antitoxin -
  B4U42_RS06795 (B4U42_06645) rhlB 1246541..1247761 (+) 1221 WP_005712618.1 ATP-dependent RNA helicase RhlB -
  B4U42_RS06800 (B4U42_06650) - 1247771..1248079 (+) 309 Protein_1270 helicase HerA-like domain-containing protein -
  B4U42_RS06805 (B4U42_06655) - 1248166..1249152 (-) 987 WP_005714908.1 IS110 family transposase -
  B4U42_RS06810 (B4U42_06660) - 1249359..1250573 (-) 1215 WP_021114868.1 ATP-binding protein -
  B4U42_RS06815 (B4U42_06665) ssb 1250780..1251319 (-) 540 WP_005714441.1 single-stranded DNA-binding protein Machinery gene
  B4U42_RS06820 (B4U42_06670) uvrA 1251622..1254450 (+) 2829 WP_005714443.1 excinuclease ABC subunit UvrA -
  B4U42_RS06825 (B4U42_06675) - 1254535..1254918 (+) 384 WP_005714445.1 YacL family protein -
  B4U42_RS06830 (B4U42_06680) - 1254884..1255135 (+) 252 WP_035519915.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19843.77 Da        Isoelectric Point: 4.9833

>NTDB_id=232163 B4U42_RS06815 WP_005714441.1 1250780..1251319(-) (ssb) [Glaesserella parasuis 29755]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGGGWNQAPAPQNYNQGYNNDNYAQNNFGNAQPQTAKAPA
KPAPQAEPPMDNFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=232163 B4U42_RS06815 WP_005714441.1 1250780..1251319(-) (ssb) [Glaesserella parasuis 29755]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGCCGTCAAGCAGAAGTCGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTCCAAAT
GCTAGATAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTGGTGGCTGGAACCAAGCACCTGCTCCGCAAAACT
ATAATCAAGGCTACAACAACGATAATTACGCACAAAATAACTTTGGCAATGCTCAACCACAAACCGCAAAAGCACCAGCA
AAACCAGCACCGCAAGCGGAACCGCCAATGGATAATTTTGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

90.556

100

0.911
  ssb Vibrio cholerae strain A1552

51.053

100

0.542
  ssb Neisseria gonorrhoeae MS11

43.478

100

0.447
  ssb Neisseria meningitidis MC58

42.703

100

0.441

Multiple sequence alignment