Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AFA_RS17865 Genome accession   NZ_CP021641
Coordinates   3900588..3901115 (-) Length   175 a.a.
NCBI ID   WP_094198119.1    Uniprot ID   -
Organism   Alcaligenes faecalis strain JQ135     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3895588..3906115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFA_RS17845 (AFA_17855) - 3896194..3897429 (-) 1236 WP_094198115.1 multidrug effflux MFS transporter -
  AFA_RS17850 (AFA_17860) - 3897613..3898161 (-) 549 WP_094198116.1 ferritin-like domain-containing protein -
  AFA_RS17855 (AFA_17865) - 3898717..3899250 (+) 534 WP_094198117.1 Chromate resistance protein ChrB -
  AFA_RS17860 (AFA_17870) - 3899234..3900460 (+) 1227 WP_199827848.1 MFS transporter -
  AFA_RS17865 (AFA_17875) ssb 3900588..3901115 (-) 528 WP_094198119.1 single-stranded DNA-binding protein Machinery gene
  AFA_RS17870 (AFA_17880) - 3901375..3902586 (-) 1212 WP_094198120.1 MFS transporter -
  AFA_RS17875 (AFA_17885) uvrA 3902698..3905661 (+) 2964 WP_094198121.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19188.23 Da        Isoelectric Point: 5.3488

>NTDB_id=232144 AFA_RS17865 WP_094198119.1 3900588..3901115(-) (ssb) [Alcaligenes faecalis strain JQ135]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGGEMGGGSMGGGEYGGGGGGAPAPQRAQRPAPQQQQQQQQQAPRNTA
PMSDNLADMDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=232144 AFA_RS17865 WP_094198119.1 3900588..3901115(-) (ssb) [Alcaligenes faecalis strain JQ135]
ATGGCATCGGTAAATAAAGTCATTCTGGTGGGCAATCTTGGCCGCGACCCAGAAGTACGCTACAGCGCAGAAGGCTCGGC
CATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCCGGCGAGCGCCGCGAGGAAACCGAATGGC
ACCGTGTGGTGTTCTATAACCGTCTGGCTGAAATCGCGGGCGAATACCTGCGCAAAGGCCGCCCCGTCTACGTAGAAGGT
CGTTTGCGCACCCGTAAATGGACGGGCCAGGACGGTCAGGAGCGTTTCACCACGGAAATTATCGCCGAGCAAATGCAAAT
GCTCGGTGGCCGCGACGGTGGTGGTGAGATGGGTGGTGGCAGTATGGGCGGTGGTGAATACGGTGGTGGCGGTGGTGGTG
CACCGGCACCGCAACGTGCTCAGCGTCCAGCGCCTCAACAACAACAGCAGCAGCAACAACAGGCTCCACGTAATACCGCT
CCTATGTCGGACAATCTGGCCGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.099

100

0.531
  ssb Glaesserella parasuis strain SC1401

47.179

100

0.526
  ssb Neisseria meningitidis MC58

47.541

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.588

100

0.491

Multiple sequence alignment