Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   S101447_RS06790 Genome accession   NZ_CP021524
Coordinates   1386636..1387193 (-) Length   185 a.a.
NCBI ID   WP_019088910.1    Uniprot ID   A0A1Y0UXD9
Organism   Acetobacter ascendens strain SRCM101447     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1381636..1392193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101447_RS06765 (S101447_01362) - 1382791..1383198 (+) 408 WP_087635667.1 hypothetical protein -
  S101447_RS06770 (S101447_01363) - 1383324..1384415 (+) 1092 WP_087635668.1 glycosyltransferase family 4 protein -
  S101447_RS06780 (S101447_01365) dksA 1384671..1385084 (-) 414 WP_003626519.1 RNA polymerase-binding protein DksA -
  S101447_RS06785 (S101447_01366) - 1385300..1386574 (-) 1275 WP_087635669.1 O-antigen ligase -
  S101447_RS06790 (S101447_01367) ssb 1386636..1387193 (-) 558 WP_019088910.1 single-stranded DNA-binding protein Machinery gene
  S101447_RS06795 (S101447_01368) rsmD 1387271..1387855 (-) 585 WP_087635670.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  S101447_RS06800 (S101447_01369) - 1387855..1388631 (-) 777 WP_019088908.1 pseudouridine synthase -
  S101447_RS06805 (S101447_01370) - 1388628..1389359 (-) 732 WP_087635671.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  S101447_RS15950 (S101447_01371) - 1389483..1389635 (-) 153 WP_003626506.1 hypothetical protein -
  S101447_RS06810 (S101447_01372) - 1389857..1390312 (+) 456 WP_019088906.1 nucleoside deaminase -
  S101447_RS06815 (S101447_01373) - 1390488..1392056 (+) 1569 WP_019088905.1 Do family serine endopeptidase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19781.44 Da        Isoelectric Point: 5.3755

>NTDB_id=231861 S101447_RS06790 WP_019088910.1 1386636..1387193(-) (ssb) [Acetobacter ascendens strain SRCM101447]
MAGSVNKVILVGNLGKDPEVRSSQSGAKIVSFSLATSDTWNDRASGERRERTEWHRVVIFNERLADVAERFLRKGRKVYL
EGSLQTRKWTDQGGQERYTTEVIIDRFRGELVLLDSRNSGEGEGEGSGGFGGGSSYGGYNSGGGSGYGAPSSAPRQQPAQ
RSGGNNSGGWDASGGNGDLDDEIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=231861 S101447_RS06790 WP_019088910.1 1386636..1387193(-) (ssb) [Acetobacter ascendens strain SRCM101447]
ATGGCTGGCAGCGTTAACAAGGTTATTCTGGTCGGCAATCTGGGCAAGGACCCCGAAGTGCGTTCCAGCCAGAGCGGTGC
AAAGATTGTTTCCTTCTCTCTGGCTACCAGCGACACATGGAATGACCGCGCATCTGGGGAACGACGTGAACGCACAGAGT
GGCATCGCGTGGTCATTTTCAATGAACGTCTGGCTGATGTGGCCGAACGTTTCCTGCGCAAAGGCCGCAAAGTTTACCTG
GAAGGTTCTCTGCAGACCAGAAAATGGACGGATCAGGGCGGTCAGGAACGCTACACGACGGAAGTAATTATTGACCGTTT
CCGTGGTGAGTTGGTGCTGCTGGATAGCCGCAATAGTGGCGAAGGCGAAGGTGAAGGCAGCGGTGGCTTTGGCGGCGGAA
GCAGCTATGGCGGCTATAATAGTGGCGGTGGCAGTGGTTATGGCGCCCCATCATCCGCACCACGCCAGCAACCAGCACAG
CGCAGCGGTGGCAATAACTCCGGCGGCTGGGATGCTTCTGGCGGCAACGGAGATCTTGATGACGAAATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0UXD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.917

100

0.497
  ssb Vibrio cholerae strain A1552

44.809

98.919

0.443
  ssb Neisseria meningitidis MC58

38.462

98.378

0.378
  ssb Neisseria gonorrhoeae MS11

37.912

98.378

0.373

Multiple sequence alignment