Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   CCD83_RS03195 Genome accession   NZ_CP021521
Coordinates   550626..551219 (+) Length   197 a.a.
NCBI ID   WP_002229321.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 09-292     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 545626..556219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD83_RS03165 (CCD83_03180) - 545913..546500 (-) 588 WP_002220670.1 superoxide dismutase -
  CCD83_RS03175 (CCD83_03190) dnaB 546664..548070 (+) 1407 WP_002225362.1 replicative DNA helicase -
  CCD83_RS03180 (CCD83_03200) pilH 548379..549047 (+) 669 WP_149385371.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CCD83_RS03185 (CCD83_03205) pilV 549077..549697 (+) 621 WP_096123540.1 type IV pilus modification protein PilV Machinery gene
  CCD83_RS03190 (CCD83_03210) pilJ 549694..550647 (+) 954 WP_149385334.1 PilW family protein Machinery gene
  CCD83_RS03195 (CCD83_03215) pilK 550626..551219 (+) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCD83_RS03200 (CCD83_03220) pilX 551224..551697 (+) 474 WP_180299614.1 PilX family type IV pilin Machinery gene
  CCD83_RS03205 (CCD83_03230) - 552601..553029 (-) 429 Protein_542 AzlC family ABC transporter permease -
  CCD83_RS03210 (CCD83_03235) dut 553171..553623 (+) 453 WP_002229326.1 dUTP diphosphatase -
  CCD83_RS03215 (CCD83_03240) dapC 553700..554887 (+) 1188 WP_002259885.1 succinyldiaminopimelate transaminase -
  CCD83_RS03220 (CCD83_03245) yaaA 555050..555829 (+) 780 WP_002229325.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21655.53 Da        Isoelectric Point: 7.5809

>NTDB_id=231728 CCD83_RS03195 WP_002229321.1 550626..551219(+) (pilK) [Neisseria meningitidis strain 09-292]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCPANSTNLCIDNKGTKYKKGTQSVSKMPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=231728 CCD83_RS03195 WP_002229321.1 550626..551219(+) (pilK) [Neisseria meningitidis strain 09-292]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTACCA
ACCTGTGCATTGACAATAAAGGGACGAAATATAAGAAAGGCACGCAAAGCGTCAGCAAAATGCCACGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.129

100

0.893

Multiple sequence alignment