Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CCD83_RS03180 Genome accession   NZ_CP021521
Coordinates   548379..549047 (+) Length   222 a.a.
NCBI ID   WP_149385371.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 09-292     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 543379..554047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD83_RS03150 (CCD83_03170) - 543470..543802 (+) 333 WP_002229316.1 hypothetical protein -
  CCD83_RS03155 (CCD83_03175) - 544134..544643 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  CCD83_RS03165 (CCD83_03180) - 545913..546500 (-) 588 WP_002220670.1 superoxide dismutase -
  CCD83_RS03175 (CCD83_03190) dnaB 546664..548070 (+) 1407 WP_002225362.1 replicative DNA helicase -
  CCD83_RS03180 (CCD83_03200) pilH 548379..549047 (+) 669 WP_149385371.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CCD83_RS03185 (CCD83_03205) pilV 549077..549697 (+) 621 WP_096123540.1 type IV pilus modification protein PilV Machinery gene
  CCD83_RS03190 (CCD83_03210) pilJ 549694..550647 (+) 954 WP_149385334.1 PilW family protein Machinery gene
  CCD83_RS03195 (CCD83_03215) pilK 550626..551219 (+) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCD83_RS03200 (CCD83_03220) pilX 551224..551697 (+) 474 WP_180299614.1 PilX family type IV pilin Machinery gene
  CCD83_RS03205 (CCD83_03230) - 552601..553029 (-) 429 Protein_542 AzlC family ABC transporter permease -
  CCD83_RS03210 (CCD83_03235) dut 553171..553623 (+) 453 WP_002229326.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24880.37 Da        Isoelectric Point: 9.5928

>NTDB_id=231725 CCD83_RS03180 WP_149385371.1 548379..549047(+) (pilH) [Neisseria meningitidis strain 09-292]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTEDVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSRFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=231725 CCD83_RS03180 WP_149385371.1 548379..549047(+) (pilH) [Neisseria meningitidis strain 09-292]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGAGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTTAACCATA
TCGCTTTCGGTCAAACGCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAGATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.068

99.55

0.847

Multiple sequence alignment