Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   CCD83_RS03190 Genome accession   NZ_CP021521
Coordinates   549694..550647 (+) Length   317 a.a.
NCBI ID   WP_149385334.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 09-292     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 544694..555647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD83_RS03165 (CCD83_03180) - 545913..546500 (-) 588 WP_002220670.1 superoxide dismutase -
  CCD83_RS03175 (CCD83_03190) dnaB 546664..548070 (+) 1407 WP_002225362.1 replicative DNA helicase -
  CCD83_RS03180 (CCD83_03200) pilH 548379..549047 (+) 669 WP_149385371.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CCD83_RS03185 (CCD83_03205) pilV 549077..549697 (+) 621 WP_096123540.1 type IV pilus modification protein PilV Machinery gene
  CCD83_RS03190 (CCD83_03210) pilJ 549694..550647 (+) 954 WP_149385334.1 PilW family protein Machinery gene
  CCD83_RS03195 (CCD83_03215) pilK 550626..551219 (+) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCD83_RS03200 (CCD83_03220) pilX 551224..551697 (+) 474 WP_180299614.1 PilX family type IV pilin Machinery gene
  CCD83_RS03205 (CCD83_03230) - 552601..553029 (-) 429 Protein_542 AzlC family ABC transporter permease -
  CCD83_RS03210 (CCD83_03235) dut 553171..553623 (+) 453 WP_002229326.1 dUTP diphosphatase -
  CCD83_RS03215 (CCD83_03240) dapC 553700..554887 (+) 1188 WP_002259885.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34970.67 Da        Isoelectric Point: 8.4318

>NTDB_id=231727 CCD83_RS03190 WP_149385334.1 549694..550647(+) (pilJ) [Neisseria meningitidis strain 09-292]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGLLSMIVLMAVGSSYFTSRKLNDAANERLAAQQDLRNAATLIVRDARMAGSFG
CFNMSEHIEQDVVSDVTQKDSLFSLKRNSTRNSTNKLIPIAESSNIGYQGFIQRLNALIFQYGIDDVNASADTTVVSSCA
AISKPGKQILNLEDVKKELKIVSQDKERNGNIARQRHVVNAYAVGRIAGEEGLFRFQLNEKGEWGNPQLLVKKINKMDIR
YIYVSGCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=231727 CCD83_RS03190 WP_149385334.1 549694..550647(+) (pilJ) [Neisseria meningitidis strain 09-292]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAAGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCCTGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGCGCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGAACAGGATGTTGTTTCCGATGTGACGCAAAAAGACTCTCTTTTTTCCTTAAAAAG
GAACAGTACAAGGAACAGTACAAATAAACTTATCCCCATAGCGGAATCTTCAAATATCGGATATCAGGGTTTTATCCAGC
GCCTTAACGCATTGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCC
GCAATATCGAAACCGGGTAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGAAGATTGTGAGTCAGGATAAGGA
GCGAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGT
TCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGG
TATATTTATGTTTCCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAG
CGCCCAAGATGCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAG
ACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

82.65

100

0.827

Multiple sequence alignment