Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CCD86_RS06105 Genome accession   NZ_CP021518
Coordinates   1071842..1072366 (-) Length   174 a.a.
NCBI ID   WP_002212976.1    Uniprot ID   P66849
Organism   Neisseria meningitidis strain 12-176     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1066842..1077366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD86_RS06095 (CCD86_06140) fumC 1068941..1070329 (+) 1389 WP_002216904.1 class II fumarate hydratase -
  CCD86_RS06100 (CCD86_06145) - 1070394..1071317 (-) 924 WP_002219053.1 DMT family transporter -
  CCD86_RS06105 (CCD86_06155) ssb 1071842..1072366 (-) 525 WP_002212976.1 single-stranded DNA-binding protein Machinery gene
  CCD86_RS06110 (CCD86_06160) - 1072370..1073752 (-) 1383 WP_002251980.1 MFS transporter -
  CCD86_RS06115 (CCD86_06165) - 1073863..1074486 (-) 624 WP_002229653.1 lytic transglycosylase domain-containing protein -
  CCD86_RS12485 - 1074546..1074776 (+) 231 WP_170316290.1 hypothetical protein -
  CCD86_RS06125 (CCD86_06180) - 1074989..1075254 (-) 266 Protein_1064 transposase -
  CCD86_RS06130 (CCD86_06185) - 1075291..1075781 (-) 491 Protein_1065 REP-associated tyrosine transposase -
  CCD86_RS06135 (CCD86_06200) - 1076471..1077292 (-) 822 WP_149315886.1 opacity family porin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19452.65 Da        Isoelectric Point: 5.8354

>NTDB_id=231593 CCD86_RS06105 WP_002212976.1 1071842..1072366(-) (ssb) [Neisseria meningitidis strain 12-176]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=231593 CCD86_RS06105 WP_002212976.1 1071842..1072366(-) (ssb) [Neisseria meningitidis strain 12-176]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGTCTCGGACGAGATCCTGAAGTACGCTATATGCCCAACGGCGAAGCCGT
CTGCAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGTCAGCGCGTAGAGCGCACCGAGTGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACTGCTTACGATATTGTCGCCAACGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGTGCGCCTTACGAGGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCGC
AGCAAAGCCGGCAGCCCGCCTCCGACGCGCCGTCCCATCCCCAAGAAGCACCAGCCGCGCCGCGCCGCCAACCCGTGCCT
GCCGCCGCCCCGGTCGAGGACATTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66849

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

100

100

1
  ssb Neisseria gonorrhoeae MS11

98.851

100

0.989
  ssb Vibrio cholerae strain A1552

47.778

100

0.494
  ssb Glaesserella parasuis strain SC1401

43.956

100

0.46

Multiple sequence alignment