Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   S1001342_RS08950 Genome accession   NZ_CP021509
Coordinates   1837534..1837998 (+) Length   154 a.a.
NCBI ID   WP_087651799.1    Uniprot ID   -
Organism   Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1832534..1842998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S1001342_RS08890 (S1001342_01786) - 1833068..1833292 (-) 225 WP_087651788.1 hypothetical protein -
  S1001342_RS08895 (S1001342_01787) - 1833289..1833609 (-) 321 WP_087651789.1 hypothetical protein -
  S1001342_RS08900 (S1001342_01788) - 1833688..1833924 (-) 237 WP_087651790.1 hypothetical protein -
  S1001342_RS08905 (S1001342_01789) - 1833924..1834214 (-) 291 WP_087651791.1 hypothetical protein -
  S1001342_RS08910 (S1001342_01790) - 1834211..1834522 (-) 312 WP_087651792.1 hypothetical protein -
  S1001342_RS08915 (S1001342_01792) - 1834954..1835217 (-) 264 WP_087651793.1 hypothetical protein -
  S1001342_RS08920 (S1001342_01793) - 1835207..1835497 (-) 291 WP_087651794.1 hypothetical protein -
  S1001342_RS08925 (S1001342_01794) - 1835576..1835881 (-) 306 WP_157668574.1 DUF3467 domain-containing protein -
  S1001342_RS08930 (S1001342_01795) - 1836023..1836367 (-) 345 WP_050819969.1 helix-turn-helix domain-containing protein -
  S1001342_RS16855 - 1836460..1836666 (+) 207 WP_408737147.1 YdaS family helix-turn-helix protein -
  S1001342_RS08940 (S1001342_01796) - 1836663..1837052 (+) 390 WP_087651797.1 hypothetical protein -
  S1001342_RS08945 (S1001342_01797) - 1837067..1837534 (+) 468 WP_157668575.1 hypothetical protein -
  S1001342_RS08950 (S1001342_01798) ssb 1837534..1837998 (+) 465 WP_087651799.1 single-stranded DNA-binding protein Machinery gene
  S1001342_RS08955 (S1001342_01799) - 1838001..1838240 (-) 240 WP_087651800.1 hypothetical protein -
  S1001342_RS16090 (S1001342_01800) - 1838397..1838687 (+) 291 WP_157668576.1 hypothetical protein -
  S1001342_RS08960 (S1001342_01801) - 1838776..1838994 (+) 219 WP_230455081.1 helix-turn-helix domain-containing protein -
  S1001342_RS08965 (S1001342_01802) - 1838991..1839269 (+) 279 WP_250698102.1 DUF2312 domain-containing protein -
  S1001342_RS08970 (S1001342_01803) - 1839272..1839631 (+) 360 WP_087651801.1 VRR-NUC domain-containing protein -
  S1001342_RS08975 (S1001342_01804) - 1839768..1840694 (+) 927 WP_087651802.1 DUF1376 domain-containing protein -
  S1001342_RS08980 (S1001342_01805) - 1840691..1841434 (+) 744 WP_087651803.1 hypothetical protein -
  S1001342_RS08985 (S1001342_01806) - 1841510..1841737 (+) 228 WP_087651804.1 hypothetical protein -
  S1001342_RS16095 - 1841734..1841901 (+) 168 WP_157668577.1 hypothetical protein -
  S1001342_RS08995 (S1001342_01808) - 1842256..1842810 (+) 555 WP_087651806.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17253.06 Da        Isoelectric Point: 5.9557

>NTDB_id=231518 S1001342_RS08950 WP_087651799.1 1837534..1837998(+) (ssb) [Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342]
MAGSVNKVTLVGNLGKDPDVRTSQSSAKIVSFSLATSDTWNDKSSGEKRERTEWHRVVIFNERLADVAERFLRKGRKVYL
EGSLQTRKWTDQGGVERFTTEVVLAAYRGELVLLDNKDAGDAPRQQQSRIQNNQQSGGWDSPQGNPDLDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=231518 S1001342_RS08950 WP_087651799.1 1837534..1837998(+) (ssb) [Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342]
ATGGCTGGCTCCGTAAATAAGGTCACGCTTGTTGGCAATCTGGGCAAAGATCCGGATGTGCGCACGAGCCAGAGCAGTGC
GAAGATCGTGTCTTTCTCGCTGGCCACCAGTGACACATGGAATGACAAGTCGTCTGGCGAAAAACGCGAACGCACGGAAT
GGCACCGCGTGGTTATTTTCAATGAACGTCTGGCAGATGTAGCCGAGCGTTTCCTGCGCAAAGGCCGCAAGGTTTATCTG
GAAGGCTCCCTGCAAACCCGCAAATGGACGGATCAAGGCGGCGTAGAGCGCTTTACAACGGAAGTCGTTCTTGCGGCTTA
TCGTGGCGAGTTGGTGCTGCTGGATAATAAAGACGCAGGCGATGCCCCGCGCCAACAGCAAAGCCGCATCCAGAACAATC
AGCAGTCCGGTGGATGGGATAGCCCGCAAGGCAATCCCGATCTGGACGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

43.316

100

0.526
  ssb Vibrio cholerae strain A1552

43.353

100

0.487
  ssb Neisseria meningitidis MC58

36.872

100

0.429
  ssb Neisseria gonorrhoeae MS11

36.872

100

0.429

Multiple sequence alignment