Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   S1001342_RS05415 Genome accession   NZ_CP021509
Coordinates   1128040..1128597 (+) Length   185 a.a.
NCBI ID   WP_087651631.1    Uniprot ID   A0A5B9GP07
Organism   Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1123040..1133597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S1001342_RS05390 (S1001342_01086) - 1123175..1124743 (-) 1569 WP_050818773.1 Do family serine endopeptidase -
  S1001342_RS05395 (S1001342_01087) - 1124919..1125374 (-) 456 WP_050818774.1 nucleoside deaminase -
  S1001342_RS16315 (S1001342_01088) - 1125595..1125747 (+) 153 WP_003626506.1 hypothetical protein -
  S1001342_RS05400 (S1001342_01089) - 1125874..1126605 (+) 732 WP_050818776.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  S1001342_RS05405 (S1001342_01090) - 1126602..1127378 (+) 777 WP_050818778.1 pseudouridine synthase -
  S1001342_RS05410 (S1001342_01091) rsmD 1127378..1127962 (+) 585 WP_050818780.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  S1001342_RS05415 (S1001342_01092) ssb 1128040..1128597 (+) 558 WP_087651631.1 single-stranded DNA-binding protein Machinery gene
  S1001342_RS05420 (S1001342_01093) - 1128661..1129935 (+) 1275 WP_050818784.1 O-antigen ligase -
  S1001342_RS05425 (S1001342_01094) dksA 1130151..1130564 (+) 414 WP_003626519.1 RNA polymerase-binding protein DksA -
  S1001342_RS05435 (S1001342_01096) - 1130806..1131270 (+) 465 WP_250698186.1 hypothetical protein -
  S1001342_RS05440 (S1001342_01097) - 1131360..1132439 (-) 1080 WP_070325589.1 IS5 family transposase -
  S1001342_RS05445 (S1001342_01098) - 1132612..1133346 (-) 735 WP_157668566.1 hypothetical protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19754.42 Da        Isoelectric Point: 5.3755

>NTDB_id=231514 S1001342_RS05415 WP_087651631.1 1128040..1128597(+) (ssb) [Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342]
MAGSVNKVILVGNLGKDPEVRSSQSGAKIVSFSLATSDTWNDRASGERRERTEWHRVVIFNERLADVAERFLRKGRKVYL
EGSLQTRKWTDQGGQERYTTEVIIDRFRGELVLLDSRNSGEGESEGGGFGGGSGSSYGGYNSGGGGYGAPSSAPRQQPAQ
RSGGNSSGGWDASGGNGDLDDEIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=231514 S1001342_RS05415 WP_087651631.1 1128040..1128597(+) (ssb) [Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342]
ATGGCTGGCAGCGTTAACAAGGTTATTCTGGTCGGCAATCTGGGCAAGGACCCCGAAGTGCGTTCCAGCCAGAGCGGTGC
AAAGATTGTTTCCTTCTCTCTGGCCACCAGCGACACATGGAATGACCGCGCATCTGGTGAACGACGTGAACGCACAGAAT
GGCATCGCGTGGTCATTTTCAATGAACGTCTGGCAGATGTGGCCGAACGTTTCCTGCGCAAAGGCCGCAAAGTTTATCTG
GAAGGCTCTCTGCAAACCCGTAAATGGACAGACCAGGGTGGGCAGGAACGCTATACAACGGAAGTGATTATTGACCGTTT
CCGTGGTGAGCTGGTGCTGCTGGATAGCCGCAATAGTGGCGAAGGCGAAAGTGAAGGCGGCGGCTTTGGTGGCGGAAGCG
GCAGCAGCTACGGTGGCTATAATAGTGGCGGCGGTGGTTATGGCGCCCCATCATCCGCCCCACGCCAGCAACCAGCACAA
CGCAGCGGTGGCAATAGCTCCGGCGGCTGGGATGCATCTGGAGGCAACGGCGATCTTGATGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B9GP07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.475

100

0.508
  ssb Vibrio cholerae strain A1552

43.956

98.378

0.432
  ssb Neisseria meningitidis MC58

38.462

98.378

0.378
  ssb Neisseria gonorrhoeae MS11

37.912

98.378

0.373

Multiple sequence alignment