Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   S101444_RS21020 Genome accession   NZ_CP021498
Coordinates   3971495..3972013 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain SRCM101444     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3966495..3977013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101444_RS20990 (S101444_04176) yyaJ 3966999..3968354 (+) 1356 WP_014481501.1 MFS transporter -
  S101444_RS20995 (S101444_04177) maa 3968388..3968942 (-) 555 WP_046161083.1 sugar O-acetyltransferase -
  S101444_RS21000 (S101444_04178) yyaH 3968960..3969340 (-) 381 WP_003244460.1 VOC family protein -
  S101444_RS21005 (S101444_04179) ccpB 3969396..3970331 (-) 936 WP_046161084.1 transcriptional regulator CcpB -
  S101444_RS21010 (S101444_04180) xth 3970390..3971148 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  S101444_RS21015 (S101444_04181) rpsR 3971212..3971451 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  S101444_RS21020 (S101444_04182) ssbA 3971495..3972013 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  S101444_RS21025 (S101444_04183) rpsF 3972054..3972341 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  S101444_RS21030 (S101444_04184) ychF 3972452..3973552 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  S101444_RS21035 (S101444_04185) yyaE 3973679..3975682 (-) 2004 WP_087614843.1 molybdopterin-dependent oxidoreductase -
  S101444_RS21040 (S101444_04186) yyzM 3975733..3975939 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=231172 S101444_RS21020 WP_003219228.1 3971495..3972013(-) (ssbA) [Bacillus subtilis subsp. subtilis strain SRCM101444]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=231172 S101444_RS21020 WP_003219228.1 3971495..3972013(-) (ssbA) [Bacillus subtilis subsp. subtilis strain SRCM101444]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment