Detailed information NTG0230873

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CCO03_RS15785
• Genome accession: NZ_CP021455
• Coordinates: 3700753..3701622 (+)
• Length: 289 a.a.
• NCBI ID: WP_236903886.1
• Uniprot ID: -
• Organism: Comamonas serinivorans strain DSM 26136
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3695753..3706622

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCO03_RS15770 (CCO03_15770)	mpl	3696262..3697647 (+)	1386	WP_087282582.1	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	-
CCO03_RS15775 (CCO03_15775)	pilB	3697782..3699515 (+)	1734	WP_236904156.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CCO03_RS15780 (CCO03_15780)	pilC	3699535..3700752 (+)	1218	WP_087282585.1	type II secretion system F family protein	Machinery gene
CCO03_RS15785 (CCO03_15785)	pilD	3700753..3701622 (+)	870	WP_236903886.1	prepilin peptidase	Machinery gene
CCO03_RS15790 (CCO03_15790)	coaE	3701619..3702224 (+)	606	WP_087282587.1	dephospho-CoA kinase	-
CCO03_RS15795 (CCO03_15795)	zapD	3702350..3703111 (+)	762	WP_087284808.1	cell division protein ZapD	-
CCO03_RS15800 (CCO03_15800)	-	3703115..3703342 (+)	228	WP_087282589.1	DNA gyrase inhibitor YacG	-
CCO03_RS15805 (CCO03_15805)	-	3703695..3704168 (-)	474	WP_087282591.1	NUDIX domain-containing protein	-
CCO03_RS15810 (CCO03_15810)	-	3704165..3705040 (-)	876	WP_087282593.1	ATP-binding protein	-
CCO03_RS15815 (CCO03_15815)	argJ	3705149..3706378 (-)	1230	WP_087282595.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 30791.51 Da
• Isoelectric Point: 7.2217

>NTDB_id=230873 CCO03_RS15785 WP_236903886.1 3700753..3701622(+) (pilD) [Comamonas serinivorans strain DSM 26136]
MLDLSYLPPAAVAGLLGVLGLLVGSFLNVVIHRLPKMMEQEWAQDCRELLGQEAVDTAPYTLWAPRSACPHCGHQIRWYE
NIPVVSYLALRGRCSGCKAPISARYPVIEAVTALLFAWCGHQFGATWAALAWCAFSALLVSMTCIDWDTQLLPDDLTYSL
LWLGLLGSVVGWTGVPVAMAVLGALAGYLSLWTVTQAFKLLTGKIGMGNGDFKLFAALGAWFGWQALVPIILLSCVVGIV
VGVALKAMRKSGQGDPIPFGPFLSGAGFLAMFLGGPALLQGMGHLVLGA

Nucleotide

• Length: 870 bp

>NTDB_id=230873 CCO03_RS15785 WP_236903886.1 3700753..3701622(+) (pilD) [Comamonas serinivorans strain DSM 26136]
GTGCTGGATCTGTCTTACCTGCCCCCTGCTGCCGTGGCGGGCTTGCTGGGTGTGCTCGGCCTGCTGGTCGGCAGCTTTCT
CAACGTCGTGATCCACCGCCTGCCCAAGATGATGGAGCAGGAGTGGGCTCAGGATTGCCGCGAGCTCCTGGGCCAGGAGG
CGGTCGACACCGCGCCCTACACGCTGTGGGCCCCTCGGTCTGCCTGCCCGCATTGCGGTCACCAGATCCGCTGGTACGAG
AACATCCCGGTGGTCAGTTACCTGGCCTTGCGGGGACGCTGTTCGGGCTGCAAGGCCCCCATCAGCGCCCGCTACCCGGT
GATCGAGGCGGTCACGGCCCTGCTGTTTGCCTGGTGCGGCCATCAGTTCGGCGCCACCTGGGCCGCACTGGCCTGGTGCG
CGTTTTCTGCCCTGCTGGTCAGCATGACCTGCATCGACTGGGACACCCAGTTGCTGCCCGACGATTTAACCTACAGCCTA
CTGTGGCTGGGCCTGCTGGGTTCGGTGGTCGGTTGGACCGGCGTGCCCGTCGCCATGGCCGTGCTGGGCGCGCTCGCCGG
CTACCTGTCGCTGTGGACCGTCACCCAGGCCTTCAAGCTGCTCACCGGCAAGATCGGCATGGGCAACGGTGACTTCAAGC
TGTTTGCCGCCCTGGGTGCCTGGTTCGGCTGGCAAGCGCTGGTGCCCATCATCCTGCTGTCCTGTGTGGTGGGCATCGTG
GTGGGCGTGGCCCTCAAGGCCATGCGCAAAAGCGGACAAGGCGATCCCATCCCCTTTGGCCCGTTTCTGTCGGGTGCGGG
ATTCCTGGCCATGTTTCTGGGCGGGCCCGCGTTGTTGCAGGGGATGGGTCATTTGGTGTTGGGTGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.545	95.156	0.481
pilD	Neisseria gonorrhoeae MS11	48.708	93.772	0.457
pilD	Vibrio campbellii strain DS40M4	49.049	91.003	0.446
pilD	Acinetobacter baumannii D1279779	46.442	92.388	0.429
pilD	Acinetobacter nosocomialis M2	45.693	92.388	0.422