Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOKVESSMR4R_RS06915 Genome accession   NZ_CP021431
Coordinates   1408317..1408811 (-) Length   164 a.a.
NCBI ID   WP_087206951.1    Uniprot ID   A0A1Y0EAQ8
Organism   Yoonia vestfoldensis strain SMR4r     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1403317..1413811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOKVESSMR4R_RS06885 (LOKVESSMR4R_01390) - 1403477..1404397 (-) 921 WP_087206938.1 site-specific tyrosine recombinase XerD -
  LOKVESSMR4R_RS06890 (LOKVESSMR4R_01391) - 1404415..1405935 (-) 1521 WP_087206941.1 hypothetical protein -
  LOKVESSMR4R_RS20430 - 1405922..1406074 (-) 153 WP_087206943.1 hypothetical protein -
  LOKVESSMR4R_RS06900 (LOKVESSMR4R_01392) - 1406225..1406782 (+) 558 WP_087206945.1 shikimate kinase -
  LOKVESSMR4R_RS06905 (LOKVESSMR4R_01393) aroB 1406782..1407894 (+) 1113 WP_087206948.1 3-dehydroquinate synthase -
  LOKVESSMR4R_RS06910 (LOKVESSMR4R_01394) - 1408000..1408311 (-) 312 WP_087212765.1 hypothetical protein -
  LOKVESSMR4R_RS06915 (LOKVESSMR4R_01395) ssb 1408317..1408811 (-) 495 WP_087206951.1 single-stranded DNA-binding protein Machinery gene
  LOKVESSMR4R_RS06920 (LOKVESSMR4R_01396) - 1408941..1410599 (-) 1659 WP_087206954.1 ABC transporter substrate-binding protein -
  LOKVESSMR4R_RS06925 (LOKVESSMR4R_01397) - 1410779..1411594 (-) 816 WP_087206956.1 helix-turn-helix transcriptional regulator -
  LOKVESSMR4R_RS06930 (LOKVESSMR4R_01398) miaA 1411659..1412588 (-) 930 WP_087206958.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  LOKVESSMR4R_RS06935 (LOKVESSMR4R_01399) pyrH 1412646..1413371 (+) 726 WP_087206960.1 UMP kinase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17136.80 Da        Isoelectric Point: 5.2870

>NTDB_id=230703 LOKVESSMR4R_RS06915 WP_087206951.1 1408317..1408811(-) (ssb) [Yoonia vestfoldensis strain SMR4r]
MAGSVNKVILIGNLGADPEIRSFQNGGKVANLRIATSETWKDKNSGERREKTEWHTVAIFQEGLVRVVEQYLKKGSKVYI
EGKLQTRKWQDQSGADRYSTEVVLQGLGGTLTMLDGRGDGGGNSGGGDYGAGSGGGGGGGRGSYNDGGYGGPSGGSDMDD
EIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=230703 LOKVESSMR4R_RS06915 WP_087206951.1 1408317..1408811(-) (ssb) [Yoonia vestfoldensis strain SMR4r]
ATGGCCGGATCAGTCAACAAAGTCATTCTTATCGGCAATCTTGGCGCCGACCCGGAAATCCGCAGCTTTCAGAACGGCGG
CAAGGTCGCGAACCTGCGCATCGCCACATCCGAGACCTGGAAAGACAAGAACAGCGGCGAGCGCCGCGAAAAGACCGAAT
GGCACACGGTTGCGATCTTTCAAGAAGGTCTGGTCCGCGTGGTCGAGCAATATCTGAAAAAAGGCTCCAAAGTCTATATC
GAGGGGAAATTGCAGACCCGCAAATGGCAGGACCAATCGGGTGCGGACCGCTATTCGACCGAAGTGGTCCTGCAAGGGCT
TGGCGGCACGCTGACCATGCTGGACGGGCGCGGTGACGGCGGCGGCAATAGCGGCGGCGGCGATTACGGCGCGGGCAGCG
GTGGTGGCGGCGGCGGTGGCCGTGGCAGCTATAATGATGGCGGCTATGGCGGCCCATCGGGCGGCAGCGACATGGATGAT
GAAATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0EAQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.571

100

0.561
  ssb Glaesserella parasuis strain SC1401

54.967

92.073

0.506
  ssb Neisseria gonorrhoeae MS11

38.462

100

0.427
  ssb Neisseria meningitidis MC58

38.462

100

0.427

Multiple sequence alignment