Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CCK83_RS05235 Genome accession   NZ_CP021428
Coordinates   1078908..1079495 (-) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUMV-6483     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1073908..1084495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCK83_RS05210 - 1073921..1075420 (+) 1500 WP_032006622.1 PLP-dependent aminotransferase family protein -
  CCK83_RS05215 - 1075487..1076929 (-) 1443 WP_087400241.1 amino acid permease -
  CCK83_RS05220 ydcN 1077235..1077783 (-) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  CCK83_RS05225 - 1077852..1078547 (+) 696 WP_032006621.1 AzlC family ABC transporter permease -
  CCK83_RS05230 - 1078544..1078867 (+) 324 WP_002117414.1 AzlD domain-containing protein -
  CCK83_RS05235 ssb 1078908..1079495 (-) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  CCK83_RS05240 yajR 1079547..1080911 (-) 1365 WP_005078603.1 MFS transporter -
  CCK83_RS05245 - 1081058..1082140 (-) 1083 WP_087400243.1 DUF475 domain-containing protein -
  CCK83_RS05250 tenA 1082403..1083077 (+) 675 WP_087089701.1 thiaminase II -
  CCK83_RS05255 glpM 1083128..1083469 (-) 342 WP_005804458.1 GlpM family protein -
  CCK83_RS05260 - 1083521..1083874 (-) 354 WP_086264742.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=230667 CCK83_RS05235 WP_005066890.1 1078908..1079495(-) (ssb) [Acinetobacter pittii strain HUMV-6483]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=230667 CCK83_RS05235 WP_005066890.1 1078908..1079495(-) (ssb) [Acinetobacter pittii strain HUMV-6483]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACGCGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATTCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCTCCTAAAGCACCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385

Multiple sequence alignment