Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CBP31_RS09540 Genome accession   NZ_CP021377
Coordinates   2185247..2185897 (+) Length   216 a.a.
NCBI ID   WP_087036725.1    Uniprot ID   A0A1Y0D702
Organism   Oceanisphaera profunda strain SM1222     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2180247..2190897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBP31_RS09530 (CBP31_09520) uvrA 2180851..2183709 (-) 2859 WP_087036721.1 excinuclease ABC subunit UvrA -
  CBP31_RS09535 (CBP31_09525) - 2183859..2185232 (+) 1374 WP_087036723.1 MFS transporter -
  CBP31_RS09540 (CBP31_09530) ssb 2185247..2185897 (+) 651 WP_087036725.1 single-stranded DNA-binding protein Machinery gene
  CBP31_RS09545 (CBP31_09535) - 2186208..2187431 (-) 1224 WP_087036727.1 dicarboxylate/amino acid:cation symporter -
  CBP31_RS09550 (CBP31_09540) - 2187810..2189798 (+) 1989 WP_087036729.1 EAL domain-containing protein -
  CBP31_RS09555 (CBP31_09545) - 2189814..2190803 (-) 990 WP_087036731.1 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23151.26 Da        Isoelectric Point: 5.7722

>NTDB_id=230255 CBP31_RS09540 WP_087036725.1 2185247..2185897(+) (ssb) [Oceanisphaera profunda strain SM1222]
MANRGINKVILIGHLGQDPEIRYMPNGNAVANITLATSETWRDKQSGEQKERTEWHRVVFFGKLAEIVGEYLRKGSQVYV
EGRLQTRKWQGQDGQDKYTTEIVVDIGGTMQMLGGRPQGGGGQGGGGQQGGWGGQQQGGQQQQQGGGQSYGGQQGSPQQG
GQGNWGGQQGSPQQSAPQGQPAYGQQQNKPAAPQSQPAPAPTYNEPPMDFDDDIPF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=230255 CBP31_RS09540 WP_087036725.1 2185247..2185897(+) (ssb) [Oceanisphaera profunda strain SM1222]
ATGGCCAATAGAGGCATCAATAAAGTTATCCTGATCGGCCATTTGGGTCAGGATCCTGAAATACGTTATATGCCGAATGG
AAATGCGGTAGCCAACATTACCTTGGCCACCAGTGAAACCTGGCGTGACAAGCAGTCTGGCGAGCAGAAAGAAAGAACCG
AGTGGCACCGCGTGGTTTTCTTTGGCAAGTTGGCAGAGATCGTCGGCGAATATCTGCGTAAAGGCTCACAAGTCTACGTA
GAAGGCCGCTTACAGACTCGTAAATGGCAAGGCCAAGACGGCCAAGACAAATACACTACCGAAATCGTGGTCGATATTGG
CGGCACCATGCAAATGCTTGGTGGTCGTCCGCAAGGCGGCGGTGGTCAAGGTGGTGGCGGTCAGCAAGGCGGCTGGGGTG
GCCAGCAACAAGGCGGCCAACAGCAGCAACAGGGCGGAGGCCAGTCTTACGGCGGCCAGCAAGGCAGCCCGCAACAAGGT
GGCCAAGGCAACTGGGGTGGCCAACAAGGCAGCCCACAGCAGTCTGCGCCCCAAGGTCAGCCCGCTTACGGCCAGCAGCA
GAATAAACCTGCCGCACCACAAAGCCAGCCAGCCCCTGCGCCCACTTATAACGAACCCCCAATGGATTTCGACGACGATA
TCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0D702

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.447

100

0.597
  ssb Glaesserella parasuis strain SC1401

49.296

98.611

0.486
  ssb Neisseria meningitidis MC58

44.811

98.148

0.44
  ssb Neisseria gonorrhoeae MS11

44.811

98.148

0.44

Multiple sequence alignment