Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | CBP31_RS09370 | Genome accession | NZ_CP021377 |
| Coordinates | 2146436..2147533 (+) | Length | 365 a.a. |
| NCBI ID | WP_087036665.1 | Uniprot ID | A0A1Y0D5K7 |
| Organism | Oceanisphaera profunda strain SM1222 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 2141436..2152533
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CBP31_RS09350 (CBP31_09340) | trkA | 2141922..2143298 (-) | 1377 | WP_087036656.1 | Trk system potassium transporter TrkA | - |
| CBP31_RS09355 (CBP31_09345) | rsmB | 2143295..2144602 (-) | 1308 | WP_087036658.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| CBP31_RS09360 (CBP31_09350) | fmt | 2144734..2145711 (-) | 978 | WP_087036660.1 | methionyl-tRNA formyltransferase | - |
| CBP31_RS09365 (CBP31_09355) | def | 2145721..2146242 (-) | 522 | WP_087036662.1 | peptide deformylase | - |
| CBP31_RS09370 (CBP31_09360) | dprA | 2146436..2147533 (+) | 1098 | WP_087036665.1 | DNA-processing protein DprA | Machinery gene |
| CBP31_RS09375 (CBP31_09365) | - | 2147536..2148009 (+) | 474 | WP_087036668.1 | DUF494 family protein | - |
| CBP31_RS09380 (CBP31_09370) | - | 2148057..2148626 (+) | 570 | WP_087036671.1 | type I DNA topoisomerase | - |
| CBP31_RS09385 (CBP31_09375) | - | 2148673..2149236 (+) | 564 | WP_087036673.1 | Sua5/YciO/YrdC/YwlC family protein | - |
| CBP31_RS09390 (CBP31_09380) | hemF | 2149293..2150201 (+) | 909 | WP_087036676.1 | oxygen-dependent coproporphyrinogen oxidase | - |
| CBP31_RS09395 (CBP31_09385) | hdfR | 2150198..2151052 (-) | 855 | WP_227874984.1 | HTH-type transcriptional regulator HdfR | - |
| CBP31_RS09400 (CBP31_09390) | aroE | 2151214..2152038 (+) | 825 | WP_087036681.1 | shikimate dehydrogenase | - |
| CBP31_RS09405 (CBP31_09395) | - | 2152050..2152310 (+) | 261 | WP_087036684.1 | DUF1488 domain-containing protein | - |
Sequence
Protein
Download Length: 365 a.a. Molecular weight: 39474.61 Da Isoelectric Point: 6.5717
>NTDB_id=230254 CBP31_RS09370 WP_087036665.1 2146436..2147533(+) (dprA) [Oceanisphaera profunda strain SM1222]
MTASRLTQHPLLPWLALQHTHGIGPVRALKLYQTLGEHWYLPENLQQTKLSTEQLSQLQTAHFELLEPILAWQQAASNRH
ILTWDNPDYPAQLKAIPAAPLILFVEGELNALTRPQIAVVGSRHPSYVGKENTKTLIPALVEAGAIITSGLALGIDGLSH
QAALDAGGISLGVLGSGLAKVYPKRHLRLATELIASGGALISECYPWIGPLAHHFPRRNRIISGLSLGVLVMEAAERSGS
LITARYALEQGREVFAIPGAWQNPLAWGCNQLIQQGAKLVLSANDILEELNVFSVAEVKVLAANSGELLPYPELLDNVGL
EATALDVIVTRCQQPVQEVLIQLVELELAGWVASVPGGYVRARRG
MTASRLTQHPLLPWLALQHTHGIGPVRALKLYQTLGEHWYLPENLQQTKLSTEQLSQLQTAHFELLEPILAWQQAASNRH
ILTWDNPDYPAQLKAIPAAPLILFVEGELNALTRPQIAVVGSRHPSYVGKENTKTLIPALVEAGAIITSGLALGIDGLSH
QAALDAGGISLGVLGSGLAKVYPKRHLRLATELIASGGALISECYPWIGPLAHHFPRRNRIISGLSLGVLVMEAAERSGS
LITARYALEQGREVFAIPGAWQNPLAWGCNQLIQQGAKLVLSANDILEELNVFSVAEVKVLAANSGELLPYPELLDNVGL
EATALDVIVTRCQQPVQEVLIQLVELELAGWVASVPGGYVRARRG
Nucleotide
Download Length: 1098 bp
>NTDB_id=230254 CBP31_RS09370 WP_087036665.1 2146436..2147533(+) (dprA) [Oceanisphaera profunda strain SM1222]
ATGACGGCATCAAGGTTAACACAACACCCACTATTGCCTTGGTTGGCTCTGCAGCACACTCACGGCATAGGTCCGGTGCG
CGCCCTTAAGCTCTACCAAACTTTAGGCGAGCATTGGTATCTGCCAGAAAATCTTCAGCAAACCAAATTAAGCACCGAGC
AATTAAGCCAGTTACAAACTGCGCACTTTGAACTACTTGAACCTATATTGGCGTGGCAGCAAGCTGCGTCTAATCGTCAT
ATTCTCACCTGGGATAATCCCGATTATCCGGCGCAACTAAAAGCCATACCGGCGGCACCCTTGATATTATTTGTGGAAGG
CGAGCTTAACGCCTTAACCCGACCGCAGATTGCAGTGGTTGGCAGTCGTCATCCCTCTTATGTGGGCAAAGAAAACACCA
AAACCTTGATCCCGGCCTTGGTTGAAGCCGGCGCCATTATCACCTCTGGCCTAGCACTCGGCATAGATGGGCTTAGCCAT
CAAGCAGCCTTAGACGCGGGCGGCATTAGTTTAGGCGTGCTGGGCTCGGGCTTAGCTAAGGTGTATCCCAAGCGCCACCT
ACGCTTGGCCACTGAGCTAATAGCGTCGGGAGGTGCGTTAATTTCCGAATGTTATCCGTGGATAGGGCCGCTGGCGCATC
ACTTCCCACGGCGTAATCGCATTATTAGCGGCTTAAGTTTGGGGGTGTTAGTGATGGAAGCGGCCGAGCGTAGTGGCTCG
CTGATTACGGCGCGTTACGCCCTAGAGCAAGGGCGCGAGGTGTTTGCCATTCCGGGGGCTTGGCAAAACCCGTTGGCGTG
GGGCTGTAATCAACTGATCCAGCAAGGAGCTAAATTAGTATTAAGCGCCAATGATATATTAGAAGAGCTAAATGTATTTT
CAGTGGCAGAGGTCAAAGTTCTTGCTGCAAATTCAGGCGAATTATTGCCTTATCCGGAGTTGTTGGATAACGTAGGACTA
GAGGCAACGGCGTTAGATGTGATTGTAACCCGTTGTCAGCAGCCGGTGCAGGAAGTGCTTATTCAGTTGGTCGAACTGGA
GTTGGCTGGCTGGGTAGCATCTGTACCCGGGGGTTATGTCAGAGCGAGGAGGGGATGA
ATGACGGCATCAAGGTTAACACAACACCCACTATTGCCTTGGTTGGCTCTGCAGCACACTCACGGCATAGGTCCGGTGCG
CGCCCTTAAGCTCTACCAAACTTTAGGCGAGCATTGGTATCTGCCAGAAAATCTTCAGCAAACCAAATTAAGCACCGAGC
AATTAAGCCAGTTACAAACTGCGCACTTTGAACTACTTGAACCTATATTGGCGTGGCAGCAAGCTGCGTCTAATCGTCAT
ATTCTCACCTGGGATAATCCCGATTATCCGGCGCAACTAAAAGCCATACCGGCGGCACCCTTGATATTATTTGTGGAAGG
CGAGCTTAACGCCTTAACCCGACCGCAGATTGCAGTGGTTGGCAGTCGTCATCCCTCTTATGTGGGCAAAGAAAACACCA
AAACCTTGATCCCGGCCTTGGTTGAAGCCGGCGCCATTATCACCTCTGGCCTAGCACTCGGCATAGATGGGCTTAGCCAT
CAAGCAGCCTTAGACGCGGGCGGCATTAGTTTAGGCGTGCTGGGCTCGGGCTTAGCTAAGGTGTATCCCAAGCGCCACCT
ACGCTTGGCCACTGAGCTAATAGCGTCGGGAGGTGCGTTAATTTCCGAATGTTATCCGTGGATAGGGCCGCTGGCGCATC
ACTTCCCACGGCGTAATCGCATTATTAGCGGCTTAAGTTTGGGGGTGTTAGTGATGGAAGCGGCCGAGCGTAGTGGCTCG
CTGATTACGGCGCGTTACGCCCTAGAGCAAGGGCGCGAGGTGTTTGCCATTCCGGGGGCTTGGCAAAACCCGTTGGCGTG
GGGCTGTAATCAACTGATCCAGCAAGGAGCTAAATTAGTATTAAGCGCCAATGATATATTAGAAGAGCTAAATGTATTTT
CAGTGGCAGAGGTCAAAGTTCTTGCTGCAAATTCAGGCGAATTATTGCCTTATCCGGAGTTGTTGGATAACGTAGGACTA
GAGGCAACGGCGTTAGATGTGATTGTAACCCGTTGTCAGCAGCCGGTGCAGGAAGTGCTTATTCAGTTGGTCGAACTGGA
GTTGGCTGGCTGGGTAGCATCTGTACCCGGGGGTTATGTCAGAGCGAGGAGGGGATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Vibrio cholerae strain A1552 |
48.541 |
100 |
0.501 |
| dprA | Vibrio campbellii strain DS40M4 |
50.413 |
99.452 |
0.501 |
| dprA | Legionella pneumophila strain ERS1305867 |
44.847 |
98.356 |
0.441 |
| dprA | Acinetobacter baylyi ADP1 |
38.992 |
100 |
0.403 |
| dprA | Glaesserella parasuis strain SC1401 |
42.183 |
92.877 |
0.392 |