Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | CBP12_RS11865 | Genome accession | NZ_CP021376 |
| Coordinates | 2573341..2574438 (+) | Length | 365 a.a. |
| NCBI ID | WP_086964680.1 | Uniprot ID | - |
| Organism | Oceanisphaera avium strain AMac2203 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 2568341..2579438
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CBP12_RS11845 (CBP12_11840) | trkA | 2568972..2570348 (-) | 1377 | WP_086964671.1 | Trk system potassium transporter TrkA | - |
| CBP12_RS11850 (CBP12_11845) | rsmB | 2570345..2571640 (-) | 1296 | WP_086964673.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| CBP12_RS11855 (CBP12_11850) | fmt | 2571666..2572616 (-) | 951 | WP_086964676.1 | methionyl-tRNA formyltransferase | - |
| CBP12_RS11860 (CBP12_11855) | def | 2572626..2573147 (-) | 522 | WP_086964678.1 | peptide deformylase | - |
| CBP12_RS11865 (CBP12_11860) | dprA | 2573341..2574438 (+) | 1098 | WP_086964680.1 | DNA-processing protein DprA | Machinery gene |
| CBP12_RS11870 (CBP12_11865) | - | 2574441..2574914 (+) | 474 | WP_086964682.1 | DUF494 family protein | - |
| CBP12_RS11875 (CBP12_11870) | - | 2574962..2575531 (+) | 570 | WP_086964684.1 | type I DNA topoisomerase | - |
| CBP12_RS11880 (CBP12_11875) | - | 2575555..2576118 (+) | 564 | WP_086964686.1 | Sua5/YciO/YrdC/YwlC family protein | - |
| CBP12_RS11885 (CBP12_11880) | hemF | 2576143..2577051 (+) | 909 | WP_086964688.1 | oxygen-dependent coproporphyrinogen oxidase | - |
| CBP12_RS11890 (CBP12_11885) | hdfR | 2577048..2577902 (-) | 855 | WP_198341809.1 | HTH-type transcriptional regulator HdfR | - |
| CBP12_RS11895 (CBP12_11890) | aroE | 2578055..2578879 (+) | 825 | WP_086964692.1 | shikimate dehydrogenase | - |
| CBP12_RS11900 (CBP12_11895) | - | 2578890..2579150 (+) | 261 | WP_086964694.1 | DUF1488 domain-containing protein | - |
Sequence
Protein
Download Length: 365 a.a. Molecular weight: 39481.59 Da Isoelectric Point: 7.2483
>NTDB_id=230235 CBP12_RS11865 WP_086964680.1 2573341..2574438(+) (dprA) [Oceanisphaera avium strain AMac2203]
MTESQLAQHPLLPWLALQNTQGIGPVRALQLYQTLGEHWYRDQLLAQTKLNASQITALQTAHFDLLEAILKWQTALHQRH
VIVWSSPDYPPQLKAIPASPLILFVEGDLSVLSAAQLAVVGSRHPSYVGKENTQRLIPPLVEAGAVITSGLALGVDGLSH
QSALAAKGKSIAVLGSGLANIYPKRHTTLAARLLEAQGALVSECYPWAKPLAHHFPRRNRIISGLSLGVLLIEAAERSGS
LITARYALEQGREVFAVPGAWQNPLATGCNQLIQQGAKLVLEASDVLEELSAFSVSNVKILRASAEQLLPYPELLDNVGL
EVTALDIIADRCQQPVQDVLIRLVELELAGWVASVPGGYVRARRG
MTESQLAQHPLLPWLALQNTQGIGPVRALQLYQTLGEHWYRDQLLAQTKLNASQITALQTAHFDLLEAILKWQTALHQRH
VIVWSSPDYPPQLKAIPASPLILFVEGDLSVLSAAQLAVVGSRHPSYVGKENTQRLIPPLVEAGAVITSGLALGVDGLSH
QSALAAKGKSIAVLGSGLANIYPKRHTTLAARLLEAQGALVSECYPWAKPLAHHFPRRNRIISGLSLGVLLIEAAERSGS
LITARYALEQGREVFAVPGAWQNPLATGCNQLIQQGAKLVLEASDVLEELSAFSVSNVKILRASAEQLLPYPELLDNVGL
EVTALDIIADRCQQPVQDVLIRLVELELAGWVASVPGGYVRARRG
Nucleotide
Download Length: 1098 bp
>NTDB_id=230235 CBP12_RS11865 WP_086964680.1 2573341..2574438(+) (dprA) [Oceanisphaera avium strain AMac2203]
ATGACAGAGTCTCAGTTAGCTCAGCACCCTTTATTACCTTGGCTGGCGTTACAAAACACTCAAGGCATAGGGCCGGTGAG
GGCCCTTCAGCTTTACCAAACGCTAGGTGAGCATTGGTATCGCGACCAACTGCTCGCTCAAACTAAATTAAATGCGAGTC
AAATAACCGCGCTGCAAACGGCGCATTTTGATTTATTAGAAGCCATTTTAAAATGGCAAACCGCTCTGCACCAGCGCCAT
GTGATAGTTTGGTCTAGTCCTGACTATCCGCCCCAGCTCAAAGCTATTCCTGCATCACCGCTGATTTTGTTTGTGGAAGG
GGATCTCAGCGTGCTTAGTGCAGCGCAGCTCGCCGTGGTAGGCAGTCGCCACCCCTCTTATGTCGGTAAAGAAAATACGC
AGCGCTTAATCCCGCCGTTAGTAGAAGCGGGTGCCGTGATTACCTCTGGCTTAGCCTTAGGCGTTGATGGCCTTAGTCAT
CAGAGTGCACTCGCTGCTAAAGGTAAAAGTATTGCGGTATTAGGCTCTGGTTTAGCGAACATTTATCCTAAGCGCCATAC
TACGCTGGCCGCTCGCTTGCTTGAAGCACAAGGCGCGCTAGTTTCTGAGTGTTACCCCTGGGCTAAGCCGTTAGCTCATC
ATTTTCCTAGGCGCAATCGTATTATTAGCGGGTTAAGTTTAGGCGTATTGCTTATAGAGGCGGCGGAGCGTAGTGGCTCT
TTAATTACGGCTCGTTACGCTCTTGAGCAAGGGCGAGAAGTGTTTGCTGTTCCTGGCGCTTGGCAAAATCCACTGGCAAC
AGGGTGTAATCAATTAATTCAACAAGGAGCCAAACTGGTATTAGAGGCGAGCGACGTCCTAGAGGAGCTGAGCGCGTTTT
CAGTGTCCAATGTCAAAATTCTACGCGCAAGTGCCGAGCAATTATTGCCTTATCCAGAGTTGTTGGATAACGTAGGGTTA
GAGGTAACGGCGCTAGATATTATTGCCGACCGTTGCCAACAGCCGGTGCAAGATGTACTTATTCGGTTGGTCGAGCTGGA
ATTGGCTGGCTGGGTAGCATCTGTACCTGGGGGTTATGTCAGAGCGAGGAGGGGATGA
ATGACAGAGTCTCAGTTAGCTCAGCACCCTTTATTACCTTGGCTGGCGTTACAAAACACTCAAGGCATAGGGCCGGTGAG
GGCCCTTCAGCTTTACCAAACGCTAGGTGAGCATTGGTATCGCGACCAACTGCTCGCTCAAACTAAATTAAATGCGAGTC
AAATAACCGCGCTGCAAACGGCGCATTTTGATTTATTAGAAGCCATTTTAAAATGGCAAACCGCTCTGCACCAGCGCCAT
GTGATAGTTTGGTCTAGTCCTGACTATCCGCCCCAGCTCAAAGCTATTCCTGCATCACCGCTGATTTTGTTTGTGGAAGG
GGATCTCAGCGTGCTTAGTGCAGCGCAGCTCGCCGTGGTAGGCAGTCGCCACCCCTCTTATGTCGGTAAAGAAAATACGC
AGCGCTTAATCCCGCCGTTAGTAGAAGCGGGTGCCGTGATTACCTCTGGCTTAGCCTTAGGCGTTGATGGCCTTAGTCAT
CAGAGTGCACTCGCTGCTAAAGGTAAAAGTATTGCGGTATTAGGCTCTGGTTTAGCGAACATTTATCCTAAGCGCCATAC
TACGCTGGCCGCTCGCTTGCTTGAAGCACAAGGCGCGCTAGTTTCTGAGTGTTACCCCTGGGCTAAGCCGTTAGCTCATC
ATTTTCCTAGGCGCAATCGTATTATTAGCGGGTTAAGTTTAGGCGTATTGCTTATAGAGGCGGCGGAGCGTAGTGGCTCT
TTAATTACGGCTCGTTACGCTCTTGAGCAAGGGCGAGAAGTGTTTGCTGTTCCTGGCGCTTGGCAAAATCCACTGGCAAC
AGGGTGTAATCAATTAATTCAACAAGGAGCCAAACTGGTATTAGAGGCGAGCGACGTCCTAGAGGAGCTGAGCGCGTTTT
CAGTGTCCAATGTCAAAATTCTACGCGCAAGTGCCGAGCAATTATTGCCTTATCCAGAGTTGTTGGATAACGTAGGGTTA
GAGGTAACGGCGCTAGATATTATTGCCGACCGTTGCCAACAGCCGGTGCAAGATGTACTTATTCGGTTGGTCGAGCTGGA
ATTGGCTGGCTGGGTAGCATCTGTACCTGGGGGTTATGTCAGAGCGAGGAGGGGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Vibrio campbellii strain DS40M4 |
48.485 |
99.452 |
0.482 |
| dprA | Vibrio cholerae strain A1552 |
49.846 |
89.041 |
0.444 |
| dprA | Legionella pneumophila strain ERS1305867 |
43.056 |
98.63 |
0.425 |
| dprA | Glaesserella parasuis strain SC1401 |
42.183 |
92.877 |
0.392 |