Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CBP33_RS18170 Genome accession   NZ_CP021359
Coordinates   3878198..3878743 (-) Length   181 a.a.
NCBI ID   WP_086913750.1    Uniprot ID   -
Organism   Acidovorax carolinensis strain NA2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3873198..3883743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBP33_RS18160 (CBP33_18155) - 3873449..3876628 (-) 3180 WP_086913748.1 DUF3427 domain-containing protein -
  CBP33_RS18165 (CBP33_18160) mnmA 3876879..3878024 (+) 1146 WP_086913749.1 tRNA 2-thiouridine(34) synthase MnmA -
  CBP33_RS18170 (CBP33_18165) ssb 3878198..3878743 (-) 546 WP_086913750.1 single-stranded DNA-binding protein Machinery gene
  CBP33_RS18175 (CBP33_18170) - 3878862..3880049 (-) 1188 WP_086913751.1 MFS transporter -
  CBP33_RS18180 (CBP33_18175) uvrA 3880331..3883324 (+) 2994 WP_418134794.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19474.73 Da        Isoelectric Point: 6.4854

>NTDB_id=230167 CBP33_RS18170 WP_086913750.1 3878198..3878743(-) (ssb) [Acidovorax carolinensis strain NA2]
MASINKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDKWKDKQTGEMKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQAGVEKYSTEIRADQMQMLGGRQGMGGQGGAHDDGGYGGDAGGGYDQAPRRAAPAPMQQRPAAPAPRPAPA
PVAQAPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=230167 CBP33_RS18170 WP_086913750.1 3878198..3878743(-) (ssb) [Acidovorax carolinensis strain NA2]
ATGGCATCCATCAACAAAGTCATCATCGTCGGCAACCTGGGCCGCGACCCTGAAATGCGCACTTTCCCCAGTGGCGACCA
GGTGGCCAACGTGACCATTGCCACCACCGACAAGTGGAAAGACAAGCAGACCGGCGAAATGAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTGGGCCAATACCTGCGCAAGGGCTCGCAGGTGTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCGGCGTCGAGAAATACAGCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTCGGTGGCCGCCAGGGCATGGGTGGCCAGGGTGGCGCCCATGACGACGGCGGCTATGGCGGTGACGCCGGCGGCGGCT
ACGACCAGGCCCCGCGCCGTGCCGCGCCCGCCCCCATGCAGCAACGCCCCGCAGCACCCGCCCCTCGGCCCGCACCCGCC
CCCGTGGCGCAGGCACCGCGCGCAGCCTCGGGTTTTGACGACATGGATGACGACATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.852

100

0.541
  ssb Glaesserella parasuis strain SC1401

51.913

100

0.525
  ssb Neisseria gonorrhoeae MS11

43.478

100

0.442
  ssb Neisseria meningitidis MC58

42.703

100

0.436

Multiple sequence alignment