Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AB987_RS09055 Genome accession   NZ_CP021347
Coordinates   1857401..1858141 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain B8300     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1852401..1863141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB987_RS09040 (AB987_1828) ponA 1852988..1855543 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  AB987_RS09045 (AB987_1829) pilM 1855705..1856763 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AB987_RS09050 (AB987_1830) pilN 1856763..1857404 (+) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  AB987_RS09055 (AB987_1831) pilO 1857401..1858141 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB987_RS09060 (AB987_1832) pilP 1858152..1858679 (+) 528 WP_004833663.1 pilus assembly protein PilP Machinery gene
  AB987_RS09065 (AB987_1833) pilQ 1858742..1860907 (+) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  AB987_RS09070 (AB987_1834) aroK 1860919..1861488 (+) 570 WP_000643712.1 shikimate kinase AroK -
  AB987_RS09075 (AB987_1835) aroB 1861517..1862599 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=230101 AB987_RS09055 WP_000076101.1 1857401..1858141(+) (pilO) [Acinetobacter baumannii strain B8300]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=230101 AB987_RS09055 WP_000076101.1 1857401..1858141(+) (pilO) [Acinetobacter baumannii strain B8300]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment