Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AB987_RS09050 Genome accession   NZ_CP021347
Coordinates   1856763..1857404 (+) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain B8300     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1851763..1862404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB987_RS09030 (AB987_1826) - 1851811..1852143 (+) 333 WP_000169598.1 hypothetical protein -
  AB987_RS09035 (AB987_1827) - 1852146..1852970 (+) 825 WP_002068938.1 putative RNA methyltransferase -
  AB987_RS09040 (AB987_1828) ponA 1852988..1855543 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  AB987_RS09045 (AB987_1829) pilM 1855705..1856763 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AB987_RS09050 (AB987_1830) pilN 1856763..1857404 (+) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  AB987_RS09055 (AB987_1831) pilO 1857401..1858141 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB987_RS09060 (AB987_1832) pilP 1858152..1858679 (+) 528 WP_004833663.1 pilus assembly protein PilP Machinery gene
  AB987_RS09065 (AB987_1833) pilQ 1858742..1860907 (+) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  AB987_RS09070 (AB987_1834) aroK 1860919..1861488 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=230100 AB987_RS09050 WP_000201224.1 1856763..1857404(+) (pilN) [Acinetobacter baumannii strain B8300]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=230100 AB987_RS09050 WP_000201224.1 1856763..1857404(+) (pilN) [Acinetobacter baumannii strain B8300]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTGGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACGCCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment