Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AB895_RS05815 Genome accession   NZ_CP021342
Coordinates   1219464..1220204 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain B8342     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1214464..1225204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB895_RS05795 (AB895_1177) aroB 1215006..1216088 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  AB895_RS05800 (AB895_1178) aroK 1216117..1216686 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AB895_RS05805 (AB895_1179) pilQ 1216698..1218863 (-) 2166 WP_031993779.1 type IV pilus secretin PilQ Machinery gene
  AB895_RS05810 (AB895_1180) pilP 1218926..1219453 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AB895_RS05815 (AB895_1181) pilO 1219464..1220204 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB895_RS05820 (AB895_1182) pilN 1220201..1220842 (-) 642 WP_004742152.1 PilN domain-containing protein Machinery gene
  AB895_RS05825 (AB895_1183) pilM 1220842..1221900 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AB895_RS05830 (AB895_1184) ponA 1222063..1224618 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=230044 AB895_RS05815 WP_000076101.1 1219464..1220204(-) (pilO) [Acinetobacter baumannii strain B8342]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=230044 AB895_RS05815 WP_000076101.1 1219464..1220204(-) (pilO) [Acinetobacter baumannii strain B8342]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment