Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AB895_RS05820 Genome accession   NZ_CP021342
Coordinates   1220201..1220842 (-) Length   213 a.a.
NCBI ID   WP_004742152.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain B8342     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1215201..1225842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB895_RS05800 (AB895_1178) aroK 1216117..1216686 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AB895_RS05805 (AB895_1179) pilQ 1216698..1218863 (-) 2166 WP_031993779.1 type IV pilus secretin PilQ Machinery gene
  AB895_RS05810 (AB895_1180) pilP 1218926..1219453 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AB895_RS05815 (AB895_1181) pilO 1219464..1220204 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB895_RS05820 (AB895_1182) pilN 1220201..1220842 (-) 642 WP_004742152.1 PilN domain-containing protein Machinery gene
  AB895_RS05825 (AB895_1183) pilM 1220842..1221900 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AB895_RS05830 (AB895_1184) ponA 1222063..1224618 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  AB895_RS05835 (AB895_1185) - 1224636..1225460 (-) 825 WP_004742150.1 putative RNA methyltransferase -
  AB895_RS05840 (AB895_1186) - 1225463..1225795 (-) 333 WP_000169599.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24059.46 Da        Isoelectric Point: 5.3968

>NTDB_id=230045 AB895_RS05820 WP_004742152.1 1220201..1220842(-) (pilN) [Acinetobacter baumannii strain B8342]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDFAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=230045 AB895_RS05820 WP_004742152.1 1220201..1220842(-) (pilN) [Acinetobacter baumannii strain B8342]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTTTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.592

100

0.986
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704

Multiple sequence alignment