Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA921_RS02085 Genome accession   NZ_CP021283
Coordinates   458325..458804 (-) Length   159 a.a.
NCBI ID   WP_015444870.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Allentown     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 453325..463804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA921_RS02045 rplO 453457..453891 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  CA921_RS02050 secY 453894..455222 (+) 1329 WP_014840959.1 preprotein translocase subunit SecY -
  CA921_RS02055 rpmJ 455239..455352 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  CA921_RS02060 rpsM 455430..455786 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  CA921_RS02065 rpsK 455810..456208 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  CA921_RS02070 rpsD 456225..456845 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  CA921_RS02075 - 456864..457856 (+) 993 WP_010946103.1 DNA-directed RNA polymerase subunit alpha -
  CA921_RS02080 rplQ 457875..458258 (+) 384 WP_010946104.1 50S ribosomal protein L17 -
  CA921_RS02085 ssb 458325..458804 (-) 480 WP_015444870.1 single-stranded DNA-binding protein Machinery gene
  CA921_RS02090 - 458886..460253 (-) 1368 WP_061692598.1 MFS transporter -
  CA921_RS02095 fabL 460415..461173 (+) 759 WP_010946107.1 enoyl-[acyl-carrier-protein] reductase FabL -
  CA921_RS02100 - 461244..461657 (+) 414 WP_027264841.1 acyl carrier protein -
  CA921_RS02105 - 461657..462553 (+) 897 WP_061692599.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17643.40 Da        Isoelectric Point: 4.6616

>NTDB_id=229654 CA921_RS02085 WP_015444870.1 458325..458804(-) (ssb) [Legionella pneumophila subsp. pneumophila strain Allentown]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=229654 CA921_RS02085 WP_015444870.1 458325..458804(-) (ssb) [Legionella pneumophila subsp. pneumophila strain Allentown]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCTGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTAGTGCTACTAATTACGACGACATGCCTTCATTTCAGGGAACCTCAACCCCTCAACAAG
CTTCAACAAAAAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.143

100

0.541
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment