Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CA924_RS12240 Genome accession   NZ_CP021281
Coordinates   2707836..2708426 (+) Length   196 a.a.
NCBI ID   WP_014844481.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Flint     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2702836..2713426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA924_RS12215 - 2703953..2704831 (+) 879 WP_015961428.1 lpg2327 family Dot/Icm T4SS effector -
  CA924_RS12220 lem22 2705096..2705479 (+) 384 WP_014842288.1 Dot/Icm T4SS effector Lem22 -
  CA924_RS12225 - 2705673..2705903 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  CA924_RS12230 - 2705884..2706780 (+) 897 WP_015961429.1 polyprenyl synthetase family protein -
  CA924_RS12235 bioC 2706824..2707678 (-) 855 WP_015961430.1 malonyl-ACP O-methyltransferase BioC -
  CA924_RS12240 comFC 2707836..2708426 (+) 591 WP_014844481.1 ComF family protein Machinery gene
  CA924_RS12245 - 2708455..2709528 (-) 1074 WP_014844482.1 site-2 protease family protein -
  CA924_RS12250 - 2709585..2709863 (-) 279 WP_010948040.1 hypothetical protein -
  CA924_RS17225 - 2709902..2710057 (+) 156 WP_162096598.1 hypothetical protein -
  CA924_RS12255 hemA 2710181..2711455 (+) 1275 WP_015444133.1 glutamyl-tRNA reductase -
  CA924_RS12260 prfA 2711439..2712527 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  CA924_RS12265 prmC 2712520..2713383 (+) 864 WP_014844485.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22371.12 Da        Isoelectric Point: 9.4846

>NTDB_id=229644 CA924_RS12240 WP_014844481.1 2707836..2708426(+) (comFC) [Legionella pneumophila subsp. pneumophila strain Flint]
MKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRFEEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKP
DCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQKIINTASQANLDGEQRRKNLRHAFYVPPVTYEHVMIVD
DLLTTGSTANEIAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=229644 CA924_RS12240 WP_014844481.1 2707836..2708426(+) (comFC) [Legionella pneumophila subsp. pneumophila strain Flint]
ATGAAACAACTTGGATCTTGCTGTCAGTACTGTGCCTACCCCCTTTCTGATGATACGTATCTGGTTTGTGGTCAATGTGT
TAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTTGAAGAGCCTCTGCGTAGTTTAATACATCAGTTTA
AATACCATAATGGCCTTTATCTGGCCTCTTTTCTAAAACAATTACTTCTTAATGCCTTACCCAAAAGCGCATTGAAACCA
GATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAAGGGGATTTAACCAGGCTGCTGTATTAACCAGATT
ATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGCCAAAAAATAATCAATACCGCTTCACAAGCCAACCTTG
ATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTACCACCTGTAACTTATGAACACGTCATGATTGTTGAT
GACTTATTAACCACAGGCAGCACAGCCAATGAAATAGCACATACATTAAAAAATGCCGGGGTTAAGAGAGTAGATATATG
TTGTTGTGCGCGGGCTGTAACTAAGAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(102-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila strain ERS1305867

100

100

1
  comFC Legionella pneumophila str. Paris

100

100

1
  comF Haemophilus influenzae 86-028NP

37.113

98.98

0.367
  comF Haemophilus influenzae Rd KW20

36.598

98.98

0.362

Multiple sequence alignment