Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   SMU_RS03050 Genome accession   NC_004350
Coordinates   602758..603696 (+) Length   312 a.a.
NCBI ID   WP_002261897.1    Uniprot ID   Q8DV62
Organism   Streptococcus mutans UA159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 597758..608696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMU_RS03020 (SMU.639) - 597866..598366 (+) 501 WP_002261902.1 GNAT family N-acetyltransferase -
  SMU_RS03025 (SMU.640c) - 598456..599829 (-) 1374 WP_002261901.1 PLP-dependent aminotransferase family protein -
  SMU_RS03030 (SMU.641) - 599957..600925 (+) 969 WP_002261900.1 alcohol dehydrogenase catalytic domain-containing protein -
  SMU_RS03035 - 600958..601085 (-) 128 Protein_569 ArsR/SmtB family transcription factor -
  SMU_RS03040 (SMU.642) - 601170..601451 (+) 282 WP_002261899.1 hypothetical protein -
  SMU_RS03045 (SMU.643) - 601557..602450 (+) 894 WP_002261898.1 alpha/beta hydrolase -
  SMU_RS03050 (SMU.644) coiA 602758..603696 (+) 939 WP_002261897.1 competence protein CoiA Machinery gene
  SMU_RS03055 (SMU.645) pepF 603718..605517 (+) 1800 WP_002261896.1 oligoendopeptidase F Regulator
  SMU_RS03060 (SMU.646) - 605730..606347 (+) 618 WP_002261895.1 HAD-IA family hydrolase -
  SMU_RS03065 (SMU.647) - 606397..607104 (+) 708 WP_002261894.1 O-methyltransferase -
  SMU_RS03070 (SMU.648) prsA 607166..608167 (+) 1002 WP_002261893.1 peptidylprolyl isomerase PrsA -

Sequence


Protein


Download         Length: 312 a.a.        Molecular weight: 36721.05 Da        Isoelectric Point: 8.7637

>NTDB_id=22963 SMU_RS03050 WP_002261897.1 602758..603696(+) (coiA) [Streptococcus mutans UA159]
MLVARDKNGKLINLLNGIPDKSDFYCPACQSPVRLKNGRVMRPHFAHVALQDCKFYSENESAEHLNLKAELYQSLSQTES
VEIEKVIPEPEQIADLLVNHNLALEVQCSRLSEARLCERTQAYQANGYQVLWLLGEKLWLDRRLSNLHKQFLYFSQNMGF
HLWELDINRRELRLKYLIYEDIFGKVYYQTRSCSFDGNIMTFLQLPYAKQTLTSYPVHQRRQVGLAIQKQLLARNPRWLR
QQELAYSQGRNLIAQSDADFFPQVRLPQCSRGFCQINQDVSHFSAAFFQYYQKQKDKEIQTLYPPAFYDKMK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=22963 SMU_RS03050 WP_002261897.1 602758..603696(+) (coiA) [Streptococcus mutans UA159]
ATGTTAGTTGCAAGGGATAAAAATGGAAAGTTGATTAATCTTCTGAATGGTATTCCTGACAAAAGTGATTTTTATTGTCC
TGCCTGCCAATCACCTGTACGTCTCAAAAACGGCAGGGTTATGCGTCCGCATTTTGCCCATGTTGCTTTGCAAGACTGCA
AATTTTACAGTGAAAATGAGTCCGCTGAACACCTAAACTTGAAAGCAGAACTCTATCAGTCATTATCTCAGACGGAAAGT
GTTGAGATCGAAAAAGTCATACCAGAACCTGAACAAATCGCAGACTTATTAGTTAATCATAACCTAGCATTAGAAGTTCA
GTGTTCTCGCTTGTCCGAAGCTCGTCTGTGTGAGCGAACGCAGGCCTATCAGGCCAATGGTTATCAGGTACTGTGGCTGC
TTGGGGAGAAACTCTGGTTGGATAGGCGTTTATCCAACTTGCACAAACAATTTCTTTACTTTTCACAAAATATGGGCTTT
CATCTTTGGGAATTAGATATTAATAGGCGTGAGTTGCGACTTAAGTACTTGATTTATGAAGATATTTTTGGCAAAGTCTA
TTATCAAACGAGGTCTTGTTCTTTTGATGGTAATATCATGACCTTTTTACAATTGCCCTATGCTAAGCAAACCTTGACTT
CTTATCCTGTTCACCAGCGCAGGCAGGTTGGTTTAGCCATTCAAAAACAACTGCTAGCACGCAATCCGCGTTGGCTGCGT
CAGCAAGAACTTGCTTATTCACAGGGGCGTAATCTGATAGCACAATCAGATGCTGATTTTTTCCCGCAGGTAAGGTTACC
GCAATGTTCAAGAGGCTTTTGTCAAATCAATCAGGATGTATCTCATTTTAGCGCAGCTTTTTTTCAATATTATCAAAAGC
AAAAAGACAAAGAAATTCAAACACTGTATCCGCCAGCCTTTTATGATAAAATGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8DV62

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

47.249

99.038

0.468

  coiA Streptococcus pneumoniae Rx1

46.278

99.038

0.458

  coiA Streptococcus pneumoniae D39

46.278

99.038

0.458

  coiA Streptococcus pneumoniae R6

46.278

99.038

0.458

  coiA Streptococcus pneumoniae TIGR4

45.955

99.038

0.455

  coiA Lactococcus lactis subsp. cremoris KW2

39.385

100

0.41


Multiple sequence alignment