Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SMU_RS02395 Genome accession   NC_004350
Coordinates   468416..469081 (+) Length   221 a.a.
NCBI ID   WP_002263025.1    Uniprot ID   Q8DVI9
Organism   Streptococcus mutans UA159     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 463416..474081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMU_RS02375 (SMU.495) - 463974..465065 (+) 1092 WP_002263029.1 glycerol dehydrogenase -
  SMU_RS02380 (SMU.496) cysK 465399..466325 (-) 927 WP_002263028.1 cysteine synthase A -
  SMU_RS02385 (SMU.497c) - 466416..467045 (-) 630 WP_002263027.1 YigZ family protein -
  SMU_RS02390 (SMU.498) comFA/cflA 467118..468419 (+) 1302 WP_002263026.1 DEAD/DEAH box helicase Machinery gene
  SMU_RS02395 (SMU.499) comFC/cflB 468416..469081 (+) 666 WP_002263025.1 ComF family protein Machinery gene
  SMU_RS02400 (SMU.500) raiA 469160..469708 (+) 549 WP_002263024.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SMU_RS02405 (SMU.501) - 469832..470926 (+) 1095 WP_002273626.1 hypothetical protein -
  SMU_RS02410 (SMU.502) - 470946..472646 (+) 1701 WP_002263022.1 zinc ribbon domain-containing protein -
  SMU_RS02415 (SMU.503c) - 472726..473361 (-) 636 WP_002263021.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26017.05 Da        Isoelectric Point: 8.9825

>NTDB_id=22955 SMU_RS02395 WP_002263025.1 468416..469081(+) (comFC/cflB) [Streptococcus mutans UA159]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAKFQFVSEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSAYKFQGDYLLRKVFIKPIKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKEDGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=22955 SMU_RS02395 WP_002263025.1 468416..469081(+) (comFC/cflB) [Streptococcus mutans UA159]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTCTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGCTTTGCGAAATTTCAATTCGTATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAGGCTCTCTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTGCTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAGATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.344

100

0.443
  comFC/cflB Streptococcus mitis NCTC 12261

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae Rx1

43.891

100

0.439
  comFC/cflB Streptococcus pneumoniae D39

43.891

100

0.439
  comFC/cflB Streptococcus pneumoniae R6

43.891

100

0.439
  comFC/cflB Streptococcus mitis SK321

43.439

100

0.434

Multiple sequence alignment