Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CA920_RS11735 Genome accession   NZ_CP021269
Coordinates   2602947..2603537 (+) Length   196 a.a.
NCBI ID   WP_027225187.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Bellingham     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2597947..2608537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA920_RS11710 - 2599065..2599943 (+) 879 WP_027225184.1 lpg2327 family Dot/Icm T4SS effector -
  CA920_RS11715 - 2600207..2600590 (+) 384 WP_027225185.1 hypothetical protein -
  CA920_RS11720 - 2600784..2601014 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  CA920_RS11725 - 2600995..2601891 (+) 897 WP_027225186.1 polyprenyl synthetase family protein -
  CA920_RS11730 bioC 2601935..2602789 (-) 855 WP_015961430.1 malonyl-ACP O-methyltransferase BioC -
  CA920_RS11735 comFC 2602947..2603537 (+) 591 WP_027225187.1 ComF family protein Machinery gene
  CA920_RS11740 - 2603566..2604639 (-) 1074 WP_027225188.1 site-2 protease family protein -
  CA920_RS11745 - 2604696..2604974 (-) 279 WP_027222429.1 hypothetical protein -
  CA920_RS11750 hemA 2605293..2606567 (+) 1275 WP_027225189.1 glutamyl-tRNA reductase -
  CA920_RS11755 prfA 2606551..2607639 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  CA920_RS11760 prmC 2607632..2608495 (+) 864 WP_027225190.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22437.20 Da        Isoelectric Point: 9.4787

>NTDB_id=229519 CA920_RS11735 WP_027225187.1 2602947..2603537(+) (comFC) [Legionella pneumophila subsp. pneumophila strain Bellingham]
MKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRFEEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKP
DCLIPVPMYPKRLKRRGFNQAAVLTRLLARQLKIPYDLHYCQKIINTDSQANLDGEQRRKNLRHAFYVSPVTYEHVMIVD
DLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=229519 CA920_RS11735 WP_027225187.1 2602947..2603537(+) (comFC) [Legionella pneumophila subsp. pneumophila strain Bellingham]
ATGAAACAACTTGGATCTTGCTGCCAGTACTGTGCCTACCCCCTTTCTGATGATACGTATCTGGTTTGTGGCCAATGTGT
TAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCCTATCGTTTTGAAGAGCCTCTGCGTAGTTTAATACATCAGTTTA
AATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACTTCTTAATGCCTTACCCAAAAGCGCATTGAAACCA
GATTGTCTAATTCCCGTTCCCATGTATCCCAAACGATTAAAACGAAGGGGATTTAACCAGGCTGCTGTATTAACCAGATT
ATTAGCTCGTCAATTAAAAATCCCTTATGATTTACATTATTGCCAAAAAATAATCAATACCGACTCACAAGCTAACCTTG
ATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTATCACCTGTAACTTATGAACACGTCATGATTGTTGAT
GATTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACATTAAAAAATGCCGGGGTTAAGAGAGTAGATATATG
TTGTTGTGCGCGGGCTGTAACTAAGAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(101-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila strain ERS1305867

96.939

100

0.969
  comFC Legionella pneumophila str. Paris

96.939

100

0.969
  comF Haemophilus influenzae 86-028NP

37.113

98.98

0.367
  comF Haemophilus influenzae Rd KW20

36.598

98.98

0.362

Multiple sequence alignment