Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA920_RS01850 Genome accession   NZ_CP021269
Coordinates   403830..404309 (-) Length   159 a.a.
NCBI ID   WP_011213016.1    Uniprot ID   A0AAV2UTR4
Organism   Legionella pneumophila subsp. pneumophila strain Bellingham     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 398830..409309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA920_RS01810 rplO 398962..399396 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  CA920_RS01815 secY 399399..400727 (+) 1329 WP_027224266.1 preprotein translocase subunit SecY -
  CA920_RS01820 rpmJ 400744..400857 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  CA920_RS01825 rpsM 400935..401291 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  CA920_RS01830 rpsK 401315..401713 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  CA920_RS01835 rpsD 401730..402350 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  CA920_RS01840 rpoA 402369..403361 (+) 993 WP_011213014.1 DNA-directed RNA polymerase subunit alpha -
  CA920_RS01845 rplQ 403380..403763 (+) 384 WP_011213015.1 50S ribosomal protein L17 -
  CA920_RS01850 ssb 403830..404309 (-) 480 WP_011213016.1 single-stranded DNA-binding protein Machinery gene
  CA920_RS01855 - 404393..405760 (-) 1368 WP_027224265.1 MFS transporter -
  CA920_RS01860 fabL 405922..406680 (+) 759 WP_027224264.1 enoyl-[acyl-carrier-protein] reductase FabL -
  CA920_RS01865 - 406751..407164 (+) 414 WP_010946108.1 acyl carrier protein -
  CA920_RS01870 - 407164..408060 (+) 897 WP_027224263.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17629.38 Da        Isoelectric Point: 4.6616

>NTDB_id=229489 CA920_RS01850 WP_011213016.1 403830..404309(-) (ssb) [Legionella pneumophila subsp. pneumophila strain Bellingham]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGSSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=229489 CA920_RS01850 WP_011213016.1 403830..404309(-) (ssb) [Legionella pneumophila subsp. pneumophila strain Bellingham]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTTGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGTGAATACATTCGTAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATACA
AATGCTCGATAGCAAAGGAAGTAGTGCTACTAATTACGACGACATGCCTTCATTTCAGGGAAGCTCTACCCCTCAACAAG
CTTCAACAAAGAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.714

100

0.547
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment