Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CA922_RS11925 Genome accession   NZ_CP021268
Coordinates   2622021..2622611 (+) Length   196 a.a.
NCBI ID   WP_014844481.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Birmingham     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2617021..2627611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA922_RS11900 - 2618138..2619016 (+) 879 WP_042755104.1 lpg2327 family Dot/Icm T4SS effector -
  CA922_RS11905 lem22 2619281..2619664 (+) 384 WP_014842288.1 Dot/Icm T4SS effector Lem22 -
  CA922_RS11910 - 2619858..2620088 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  CA922_RS11915 - 2620069..2620965 (+) 897 WP_011947174.1 polyprenyl synthetase family protein -
  CA922_RS11920 bioC 2621009..2621863 (-) 855 WP_015961430.1 malonyl-ACP O-methyltransferase BioC -
  CA922_RS11925 comFC 2622021..2622611 (+) 591 WP_014844481.1 ComF family protein Machinery gene
  CA922_RS11930 - 2622640..2623713 (-) 1074 WP_011947177.1 site-2 protease family protein -
  CA922_RS11935 - 2623770..2624048 (-) 279 WP_010948040.1 hypothetical protein -
  CA922_RS15815 - 2624087..2624242 (+) 156 WP_162267450.1 hypothetical protein -
  CA922_RS11940 hemA 2624366..2625640 (+) 1275 WP_015444133.1 glutamyl-tRNA reductase -
  CA922_RS11945 prfA 2625624..2626712 (+) 1089 WP_042755102.1 peptide chain release factor 1 -
  CA922_RS11950 prmC 2626705..2627568 (+) 864 WP_027225915.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22371.12 Da        Isoelectric Point: 9.4846

>NTDB_id=229479 CA922_RS11925 WP_014844481.1 2622021..2622611(+) (comFC) [Legionella pneumophila subsp. pneumophila strain Birmingham]
MKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRFEEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKP
DCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQKIINTASQANLDGEQRRKNLRHAFYVPPVTYEHVMIVD
DLLTTGSTANEIAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=229479 CA922_RS11925 WP_014844481.1 2622021..2622611(+) (comFC) [Legionella pneumophila subsp. pneumophila strain Birmingham]
ATGAAACAACTTGGATCTTGCTGTCAGTACTGTGCCTACCCCCTTTCTGATGATACGTATCTGGTTTGTGGTCAATGTGT
TAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTTGAAGAGCCTCTGCGTAGTTTAATACATCAGTTTA
AATACCATAATGGCCTTTATCTGGCCTCTTTTCTAAAACAATTACTTCTTAATGCCTTACCCAAAAGCGCATTGAAACCA
GATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAAGGGGATTTAACCAGGCTGCTGTATTAACCAGATT
ATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGCCAAAAAATAATCAATACCGCTTCACAAGCCAACCTTG
ATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTACCACCTGTAACTTATGAACACGTCATGATTGTTGAT
GACTTATTAACCACAGGCAGCACAGCCAATGAAATAGCACATACATTAAAAAATGCCGGGGTTAAGAGAGTAGATATATG
TTGTTGTGCGCGGGCTGTAACTAAGAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(102-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila strain ERS1305867

100

100

1
  comFC Legionella pneumophila str. Paris

100

100

1
  comF Haemophilus influenzae 86-028NP

37.113

98.98

0.367
  comF Haemophilus influenzae Rd KW20

36.598

98.98

0.362

Multiple sequence alignment