Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA922_RS02025 Genome accession   NZ_CP021268
Coordinates   448025..448504 (-) Length   159 a.a.
NCBI ID   WP_011213016.1    Uniprot ID   A0AAV2UTR4
Organism   Legionella pneumophila subsp. pneumophila strain Birmingham     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 443025..453504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA922_RS01985 rplO 443157..443591 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  CA922_RS01990 secY 443594..444922 (+) 1329 WP_011945551.1 preprotein translocase subunit SecY -
  CA922_RS01995 rpmJ 444939..445052 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  CA922_RS02000 rpsM 445130..445486 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  CA922_RS02005 rpsK 445510..445908 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  CA922_RS02010 rpsD 445925..446545 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  CA922_RS02015 rpoA 446564..447556 (+) 993 WP_011213014.1 DNA-directed RNA polymerase subunit alpha -
  CA922_RS02020 rplQ 447575..447958 (+) 384 WP_011213015.1 50S ribosomal protein L17 -
  CA922_RS02025 ssb 448025..448504 (-) 480 WP_011213016.1 single-stranded DNA-binding protein Machinery gene
  CA922_RS02030 - 448588..449955 (-) 1368 WP_027226453.1 MFS transporter -
  CA922_RS02035 fabL 450117..450875 (+) 759 WP_042754767.1 enoyl-[acyl-carrier-protein] reductase FabL -
  CA922_RS02040 - 450946..451359 (+) 414 WP_010946108.1 acyl carrier protein -
  CA922_RS02045 - 451359..452255 (+) 897 WP_027226450.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17629.38 Da        Isoelectric Point: 4.6616

>NTDB_id=229448 CA922_RS02025 WP_011213016.1 448025..448504(-) (ssb) [Legionella pneumophila subsp. pneumophila strain Birmingham]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGSSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=229448 CA922_RS02025 WP_011213016.1 448025..448504(-) (ssb) [Legionella pneumophila subsp. pneumophila strain Birmingham]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGATAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTTGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGTGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGTCAAGATAGATATACAACTGAAATTGTTGCGTCTGATATACA
AATGCTCGATAGCAAAGGAAGTAGTGCTACTAATTACGACGACATGCCTTCATTTCAGGGATCCTCTACCCCTCAACAAG
CTTCAACAAAGAATCAAGCAACACCAACATCTACAGCACAAGATGCTTTTGATGAGTTAGATGATGACATACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.714

100

0.547
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment