Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA923_RS01805 Genome accession   NZ_CP021267
Coordinates   396429..396908 (-) Length   159 a.a.
NCBI ID   WP_015444870.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Burlington     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 391429..401908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA923_RS01765 rplO 391560..391994 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  CA923_RS01770 secY 391997..393325 (+) 1329 WP_014840959.1 preprotein translocase subunit SecY -
  CA923_RS01775 rpmJ 393342..393455 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  CA923_RS01780 rpsM 393533..393889 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  CA923_RS01785 rpsK 393913..394311 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  CA923_RS01790 rpsD 394328..394948 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  CA923_RS01795 rpoA 394967..395959 (+) 993 WP_010946103.1 DNA-directed RNA polymerase subunit alpha -
  CA923_RS01800 rplQ 395978..396361 (+) 384 WP_010946104.1 50S ribosomal protein L17 -
  CA923_RS01805 ssb 396429..396908 (-) 480 WP_015444870.1 single-stranded DNA-binding protein Machinery gene
  CA923_RS01810 - 396992..398359 (-) 1368 WP_010946106.1 MFS transporter -
  CA923_RS01815 fabL 398521..399279 (+) 759 WP_010946107.1 enoyl-[acyl-carrier-protein] reductase FabL -
  CA923_RS01820 - 399350..399763 (+) 414 WP_010946108.1 acyl carrier protein -
  CA923_RS01825 - 399763..400659 (+) 897 WP_015444869.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17643.40 Da        Isoelectric Point: 4.6616

>NTDB_id=229406 CA923_RS01805 WP_015444870.1 396429..396908(-) (ssb) [Legionella pneumophila subsp. pneumophila strain Burlington]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=229406 CA923_RS01805 WP_015444870.1 396429..396908(-) (ssb) [Legionella pneumophila subsp. pneumophila strain Burlington]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTAGTGCCACTAATTACGACGACATGCCTTCATTTCAGGGAACCTCTACCCCTCAACAAG
CTTCAACAAAAAATCAAGCAACTCCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.143

100

0.541
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment