Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA926_RS02105 Genome accession   NZ_CP021265
Coordinates   452828..453310 (-) Length   160 a.a.
NCBI ID   WP_027228973.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain Los Angeles     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 447828..458310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA926_RS02065 rplO 447958..448392 (+) 435 WP_027228978.1 50S ribosomal protein L15 -
  CA926_RS02070 secY 448395..449723 (+) 1329 WP_027223431.1 preprotein translocase subunit SecY -
  CA926_RS02075 rpmJ 449740..449853 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  CA926_RS02080 rpsM 449931..450287 (+) 357 WP_027228977.1 30S ribosomal protein S13 -
  CA926_RS02085 rpsK 450311..450709 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  CA926_RS02090 rpsD 450726..451346 (+) 621 WP_027228976.1 30S ribosomal protein S4 -
  CA926_RS02095 rpoA 451365..452357 (+) 993 WP_027228975.1 DNA-directed RNA polymerase subunit alpha -
  CA926_RS02100 rplQ 452376..452759 (+) 384 WP_027223435.1 50S ribosomal protein L17 -
  CA926_RS02105 ssb 452828..453310 (-) 483 WP_027228973.1 single-stranded DNA-binding protein Machinery gene
  CA926_RS02110 - 453400..454761 (-) 1362 WP_028379248.1 MFS transporter -
  CA926_RS02115 fabL 454923..455681 (+) 759 WP_028379249.1 enoyl-[acyl-carrier-protein] reductase FabL -
  CA926_RS02120 - 455752..456165 (+) 414 WP_027223439.1 acyl carrier protein -
  CA926_RS02125 - 456165..457061 (+) 897 WP_028379250.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17736.49 Da        Isoelectric Point: 4.8129

>NTDB_id=229324 CA926_RS02105 WP_027228973.1 452828..453310(-) (ssb) [Legionella pneumophila subsp. fraseri strain Los Angeles]
MARGINKVILVGNVGADPEVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIIASDIQMLDSKGNSTSNYDDMPSFQGTSSPQQAPTKNHSASAASTAQDAFDELDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=229324 CA926_RS02105 WP_027228973.1 452828..453310(-) (ssb) [Legionella pneumophila subsp. fraseri strain Los Angeles]
ATGGCAAGAGGTATTAATAAAGTTATACTGGTAGGTAATGTAGGCGCTGATCCTGAGGTACGTTATTTACCCAATGGAAA
TGCTGTAACTACACTTTCAGTTGCCACCAGTGAAACATGGAAGGACAAAACGACTGGTGAAAAGCAGGATAGAACCGAAT
GGCACAGGGTCGTATGCTTTAATCGTCTGGGAGAAATAGCCGGTGAATATATTCGCAAAGGTTCCAAGCTCTATGTTGAA
GGAAGCTTAAGAACAAGAAAATGGCAGGATCAGCAGGGCCAAGATAGATATACAACTGAAATCATTGCATCTGATATTCA
AATGCTTGATAGCAAAGGAAATAGTACCTCAAATTACGACGACATGCCTTCATTTCAGGGGACCTCCTCTCCTCAACAAG
CCCCAACAAAAAATCACTCAGCATCCGCTGCATCTACCGCACAAGATGCTTTTGATGAACTAGACGATGACATACCTTTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.247

100

0.581
  ssb Vibrio cholerae strain A1552

48.571

100

0.531
  ssb Neisseria meningitidis MC58

40.113

100

0.444
  ssb Neisseria gonorrhoeae MS11

39.548

100

0.437

Multiple sequence alignment