Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA934_RS02120 Genome accession   NZ_CP021259
Coordinates   456855..457337 (-) Length   160 a.a.
NCBI ID   WP_027228973.1    Uniprot ID   -
Organism   Legionella pneumophila strain D-7708     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 451855..462337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA934_RS02080 rplO 451985..452419 (+) 435 WP_027228978.1 50S ribosomal protein L15 -
  CA934_RS02085 secY 452422..453750 (+) 1329 WP_027223431.1 preprotein translocase subunit SecY -
  CA934_RS02090 rpmJ 453767..453880 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  CA934_RS02095 rpsM 453958..454314 (+) 357 WP_027228977.1 30S ribosomal protein S13 -
  CA934_RS02100 rpsK 454338..454736 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  CA934_RS02105 rpsD 454753..455373 (+) 621 WP_027228976.1 30S ribosomal protein S4 -
  CA934_RS02110 rpoA 455392..456384 (+) 993 WP_062726923.1 DNA-directed RNA polymerase subunit alpha -
  CA934_RS02115 rplQ 456403..456786 (+) 384 WP_027223435.1 50S ribosomal protein L17 -
  CA934_RS02120 ssb 456855..457337 (-) 483 WP_027228973.1 single-stranded DNA-binding protein Machinery gene
  CA934_RS02125 - 457427..458788 (-) 1362 WP_106224805.1 MFS transporter -
  CA934_RS02130 fabL 458950..459708 (+) 759 WP_028379249.1 enoyl-[acyl-carrier-protein] reductase FabL -
  CA934_RS02135 - 459779..460192 (+) 414 WP_027223439.1 acyl carrier protein -
  CA934_RS02140 - 460192..461088 (+) 897 WP_028379250.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17736.49 Da        Isoelectric Point: 4.8129

>NTDB_id=229157 CA934_RS02120 WP_027228973.1 456855..457337(-) (ssb) [Legionella pneumophila strain D-7708]
MARGINKVILVGNVGADPEVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIIASDIQMLDSKGNSTSNYDDMPSFQGTSSPQQAPTKNHSASAASTAQDAFDELDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=229157 CA934_RS02120 WP_027228973.1 456855..457337(-) (ssb) [Legionella pneumophila strain D-7708]
ATGGCAAGAGGTATTAATAAAGTTATACTGGTAGGTAATGTAGGCGCTGATCCTGAGGTACGTTATTTACCCAATGGAAA
TGCTGTAACTACACTTTCAGTTGCCACCAGTGAAACATGGAAGGACAAAACGACTGGTGAAAAGCAGGATAGAACCGAAT
GGCACAGGGTCGTATGCTTTAATCGTCTGGGAGAAATAGCCGGTGAATATATTCGCAAAGGTTCCAAGCTCTATGTTGAA
GGAAGCTTAAGAACAAGAAAATGGCAGGATCAGCAGGGCCAAGATAGATATACAACTGAAATCATTGCATCTGATATTCA
AATGCTTGATAGCAAAGGAAATAGTACCTCAAATTACGACGACATGCCTTCATTTCAGGGGACCTCCTCTCCTCAACAAG
CCCCAACAAAAAATCACTCAGCATCCGCTGCATCTACCGCACAAGATGCTTTTGATGAACTAGACGATGACATACCTTTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.247

100

0.581
  ssb Vibrio cholerae strain A1552

48.571

100

0.531
  ssb Neisseria meningitidis MC58

40.113

100

0.444
  ssb Neisseria gonorrhoeae MS11

39.548

100

0.437

Multiple sequence alignment