Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA935_RS02105 Genome accession   NZ_CP021258
Coordinates   452858..453340 (-) Length   160 a.a.
NCBI ID   WP_027228973.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain D-5744     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 447858..458340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA935_RS02065 rplO 447988..448422 (+) 435 WP_027228978.1 50S ribosomal protein L15 -
  CA935_RS02070 secY 448425..449753 (+) 1329 WP_027223431.1 preprotein translocase subunit SecY -
  CA935_RS02075 rpmJ 449770..449883 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  CA935_RS02080 rpsM 449961..450317 (+) 357 WP_027228977.1 30S ribosomal protein S13 -
  CA935_RS02085 rpsK 450341..450739 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  CA935_RS02090 rpsD 450756..451376 (+) 621 WP_027228976.1 30S ribosomal protein S4 -
  CA935_RS02095 rpoA 451395..452387 (+) 993 WP_027228975.1 DNA-directed RNA polymerase subunit alpha -
  CA935_RS02100 rplQ 452406..452789 (+) 384 WP_027228974.1 50S ribosomal protein L17 -
  CA935_RS02105 ssb 452858..453340 (-) 483 WP_027228973.1 single-stranded DNA-binding protein Machinery gene
  CA935_RS02110 - 453430..454791 (-) 1362 WP_027228972.1 MFS transporter -
  CA935_RS02115 fabL 454953..455711 (+) 759 WP_027228971.1 enoyl-[acyl-carrier-protein] reductase FabL -
  CA935_RS02120 - 455782..456195 (+) 414 WP_027223439.1 acyl carrier protein -
  CA935_RS02125 - 456195..457091 (+) 897 WP_027228970.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17736.49 Da        Isoelectric Point: 4.8129

>NTDB_id=229115 CA935_RS02105 WP_027228973.1 452858..453340(-) (ssb) [Legionella pneumophila subsp. fraseri strain D-5744]
MARGINKVILVGNVGADPEVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIIASDIQMLDSKGNSTSNYDDMPSFQGTSSPQQAPTKNHSASAASTAQDAFDELDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=229115 CA935_RS02105 WP_027228973.1 452858..453340(-) (ssb) [Legionella pneumophila subsp. fraseri strain D-5744]
ATGGCAAGAGGTATTAATAAAGTTATACTGGTAGGTAATGTAGGCGCTGATCCTGAGGTACGCTATTTACCCAATGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAGGACAAAACGACTGGTGAAAAGCAGGATAGAACCGAAT
GGCACAGAGTCGTATGTTTTAATCGTCTGGGTGAAATAGCCGGTGAATATATTCGCAAAGGTTCCAAGCTCTATGTTGAA
GGAAGCTTAAGAACAAGAAAATGGCAAGATCAGCAGGGCCAAGATAGATATACAACTGAAATCATTGCATCTGATATTCA
AATGCTCGATAGCAAAGGAAATAGTACCTCAAATTACGACGACATGCCTTCATTTCAGGGGACCTCCTCTCCTCAACAAG
CCCCAACAAAAAATCACTCAGCATCTGCTGCATCTACCGCACAAGATGCTTTTGATGAACTAGACGATGACATACCTTTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.247

100

0.581
  ssb Vibrio cholerae strain A1552

48.571

100

0.531
  ssb Neisseria meningitidis MC58

40.113

100

0.444
  ssb Neisseria gonorrhoeae MS11

39.548

100

0.437

Multiple sequence alignment