Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA264_RS15050 Genome accession   NZ_CP021235
Coordinates   3520008..3520487 (+) Length   159 a.a.
NCBI ID   WP_025608212.1    Uniprot ID   A0A1X9YUW4
Organism   Pontibacter actiniarum strain DSM 19842     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3515008..3525487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA264_RS15030 (CA264_14980) - 3515434..3517032 (-) 1599 WP_025608208.1 Rne/Rng family ribonuclease -
  CA264_RS15035 (CA264_14985) - 3517248..3518114 (-) 867 WP_025608209.1 tetratricopeptide repeat protein -
  CA264_RS15040 (CA264_14990) - 3518175..3518480 (-) 306 WP_025608210.1 HU family DNA-binding protein -
  CA264_RS15045 (CA264_14995) mutY 3518806..3519897 (+) 1092 WP_025608211.1 A/G-specific adenine glycosylase -
  CA264_RS15050 (CA264_15000) ssb 3520008..3520487 (+) 480 WP_025608212.1 single-stranded DNA-binding protein Machinery gene
  CA264_RS15055 (CA264_15005) gldE 3520514..3521884 (+) 1371 WP_025608213.1 gliding motility-associated protein GldE -
  CA264_RS15060 (CA264_15010) gldD 3521844..3522461 (+) 618 WP_051364482.1 gliding motility lipoprotein GldD -
  CA264_RS15070 (CA264_15020) recG 3523189..3525288 (+) 2100 WP_025608216.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17055.68 Da        Isoelectric Point: 5.2581

>NTDB_id=229072 CA264_RS15050 WP_025608212.1 3520008..3520487(+) (ssb) [Pontibacter actiniarum strain DSM 19842]
MASVNKVILIGNLGKDPEVRHLEGGVAVARFPIATSETFKDKQGQRQERTEWHNIVLWRGLAEVAEKYLKKGNSVYIEGR
LRTNNYQDKDGIQRYSTEIVADQMTMLGGRNDNGNGGGGNYQESAASSGSNYGAGAAAGSGNSGGASAFQNDEPDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=229072 CA264_RS15050 WP_025608212.1 3520008..3520487(+) (ssb) [Pontibacter actiniarum strain DSM 19842]
ATGGCAAGTGTTAACAAAGTAATCTTGATCGGAAACCTGGGCAAAGACCCGGAGGTTCGTCACCTGGAAGGTGGTGTGGC
TGTAGCCCGCTTCCCTATCGCCACTTCCGAAACGTTTAAAGACAAGCAGGGCCAGCGCCAGGAGCGCACCGAGTGGCACA
ACATTGTGCTGTGGAGAGGCCTGGCCGAGGTAGCGGAGAAGTACCTGAAGAAAGGCAACTCTGTGTACATCGAGGGCAGA
CTGCGCACCAACAACTACCAGGATAAAGACGGCATCCAGCGCTACAGCACCGAAATCGTTGCAGACCAGATGACCATGCT
GGGTGGCCGCAACGACAACGGCAATGGCGGCGGCGGCAATTACCAGGAGTCGGCAGCAAGCAGTGGCAGCAACTACGGTG
CAGGCGCAGCAGCCGGCAGCGGCAATAGCGGCGGAGCATCTGCGTTCCAGAACGACGAGCCGGACGACCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X9YUW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

49.133

100

0.535
  ssb Neisseria gonorrhoeae MS11

49.133

100

0.535
  ssb Vibrio cholerae strain A1552

46.328

100

0.516
  ssb Glaesserella parasuis strain SC1401

47.297

93.082

0.44

Multiple sequence alignment