Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SAG_RS08225 Genome accession   NC_004116
Coordinates   1108369..1109049 (-) Length   226 a.a.
NCBI ID   WP_000274751.1    Uniprot ID   Q3K0Z6
Organism   Streptococcus agalactiae 2603V/R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1103369..1114049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAG_RS08195 (SAG1095) - 1103591..1104262 (-) 672 WP_000061344.1 GTP pyrophosphokinase -
  SAG_RS08200 (SAG1096) - 1104372..1104944 (+) 573 WP_000149079.1 CYTH domain-containing protein -
  SAG_RS08205 (SAG1097) - 1105121..1106095 (+) 975 WP_000840698.1 ribose-phosphate diphosphokinase -
  SAG_RS08210 (SAG1098) - 1106099..1107214 (+) 1116 WP_000639605.1 cysteine desulfurase family protein -
  SAG_RS08215 (SAG1099) - 1107216..1107563 (+) 348 WP_000863500.1 DUF1831 domain-containing protein -
  SAG_RS08220 (SAG1100) - 1107718..1108356 (+) 639 WP_000605175.1 redox-sensing transcriptional repressor Rex -
  SAG_RS08225 (SAG1101) radC 1108369..1109049 (-) 681 WP_000274751.1 RadC family protein Machinery gene
  SAG_RS08230 (SAG1102) - 1109145..1110278 (-) 1134 WP_000667244.1 AI-2E family transporter -
  SAG_RS08235 (SAG1103) - 1110369..1111808 (-) 1440 WP_000989482.1 6-phospho-beta-glucosidase -
  SAG_RS08240 (SAG1104) - 1111968..1112582 (-) 615 WP_000895132.1 SGNH/GDSL hydrolase family protein -
  SAG_RS08245 (SAG1105) - 1112683..1113504 (-) 822 WP_000593347.1 Cof-type HAD-IIB family hydrolase -
  SAG_RS13775 - 1113687..1113867 (-) 181 Protein_1084 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25841.15 Da        Isoelectric Point: 8.6567

>NTDB_id=22899 SAG_RS08225 WP_000274751.1 1108369..1109049(-) (radC) [Streptococcus agalactiae 2603V/R]
MYHIELKKEALLPRERLVDLGADRLSNQELLAILLRTGIKEKPVLEISTQILENISSLADFGQLSLQELQSIKGIGQVKS
VEIKAMLELAKRIHKAEYDRKEQILSSEQLARKMMLELGDKKQEHLVAIYMDTQNRIIEQRTIFIGTVRRSVAEPREILH
YACKNMATSLIIIHNHPSGSPKPSESDLSFTKKIKRSCDHLGIVCLDHIIVGKNKYYSFREEADIL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=22899 SAG_RS08225 WP_000274751.1 1108369..1109049(-) (radC) [Streptococcus agalactiae 2603V/R]
ATGTACCATATTGAATTAAAAAAGGAAGCTTTATTACCAAGAGAACGCCTAGTTGATTTAGGCGCAGATAGATTGAGTAA
TCAGGAGTTATTAGCCATTCTCTTACGTACAGGTATTAAAGAAAAACCTGTTCTGGAAATTTCAACGCAAATTTTAGAAA
ACATAAGCAGTTTAGCAGATTTTGGTCAATTATCCTTACAGGAGTTGCAATCCATTAAAGGAATCGGTCAGGTTAAATCC
GTCGAAATAAAAGCTATGCTAGAACTAGCAAAACGGATTCACAAAGCTGAATATGATCGTAAAGAGCAAATTTTAAGTAG
TGAACAATTAGCGAGGAAAATGATGCTCGAATTAGGGGATAAAAAACAAGAACATTTAGTAGCTATTTATATGGATACAC
AAAATCGTATTATCGAACAGAGAACTATTTTTATTGGTACTGTACGTCGTTCAGTAGCAGAGCCAAGAGAAATTCTACAT
TATGCTTGTAAAAACATGGCAACTTCTTTGATTATCATACATAATCATCCCTCAGGTTCTCCAAAGCCCAGTGAAAGTGA
TTTAAGTTTCACTAAAAAAATAAAACGATCATGTGATCATCTGGGAATTGTCTGCCTAGATCACATCATCGTTGGAAAAA
ATAAATATTATAGTTTTCGAGAAGAAGCAGATATTTTATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(12-80)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K0Z6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

59.292

100

0.593
  radC Streptococcus pneumoniae R6

58.85

100

0.589
  radC Streptococcus pneumoniae D39

58.85

100

0.589
  radC Streptococcus gordonii str. Challis substr. CH1

58.85

100

0.589
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

42.654

93.363

0.398