Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   B9N48_RS20430 Genome accession   NZ_CP021169
Coordinates   3906267..3906785 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain TLO3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3901267..3911785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS20400 yyaJ 3901772..3903127 (+) 1356 WP_014481501.1 MFS transporter -
  B9N48_RS20405 maa 3903161..3903715 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  B9N48_RS20410 yyaH 3903731..3904111 (-) 381 WP_029726089.1 VOC family protein -
  B9N48_RS20415 ccpB 3904167..3905102 (-) 936 WP_086344554.1 transcriptional regulator CcpB -
  B9N48_RS20420 xth 3905162..3905920 (-) 759 WP_086344555.1 exodeoxyribonuclease III -
  B9N48_RS20425 rpsR 3905984..3906223 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  B9N48_RS20430 ssbA 3906267..3906785 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  B9N48_RS20435 rpsF 3906826..3907113 (-) 288 WP_024571351.1 30S ribosomal protein S6 -
  B9N48_RS20440 ychF 3907224..3908324 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  B9N48_RS20445 yyaE 3908451..3910454 (-) 2004 WP_086344556.1 molybdopterin-dependent oxidoreductase -
  B9N48_RS20450 yyzM 3910505..3910711 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=228810 B9N48_RS20430 WP_003219228.1 3906267..3906785(-) (ssbA) [Bacillus subtilis strain TLO3]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=228810 B9N48_RS20430 WP_003219228.1 3906267..3906785(-) (ssbA) [Bacillus subtilis strain TLO3]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment