Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   B9N48_RS15850 Genome accession   NZ_CP021169
Coordinates   3019382..3020026 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3014382..3025026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS15815 mrpB 3015574..3016005 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  B9N48_RS15820 mrpC 3016005..3016346 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  B9N48_RS15825 mrpD 3016339..3017820 (+) 1482 WP_032726793.1 Na+/H+ antiporter subunit D -
  B9N48_RS15830 mrpE 3017826..3018302 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  B9N48_RS15835 mrpF 3018302..3018586 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  B9N48_RS15840 mnhG 3018570..3018944 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  B9N48_RS15845 yuxO 3018983..3019363 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  B9N48_RS15850 comA 3019382..3020026 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  B9N48_RS15855 comP 3020107..3022416 (-) 2310 WP_086344258.1 two-component system sensor histidine kinase ComP Regulator
  B9N48_RS15860 comX 3022431..3022598 (-) 168 WP_038828676.1 competence pheromone ComX Regulator
  B9N48_RS15865 comQ 3022586..3023485 (-) 900 WP_086344259.1 polyprenyl synthetase family protein Regulator
  B9N48_RS15870 degQ 3023670..3023810 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  B9N48_RS20705 - 3024032..3024157 (+) 126 WP_003228793.1 hypothetical protein -
  B9N48_RS15875 - 3024272..3024640 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=228792 B9N48_RS15850 WP_003220716.1 3019382..3020026(-) (comA) [Bacillus subtilis strain TLO3]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=228792 B9N48_RS15850 WP_003220716.1 3019382..3020026(-) (comA) [Bacillus subtilis strain TLO3]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment