Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   CAY62_RS12125 Genome accession   NZ_CP021151
Coordinates   2579201..2579797 (+) Length   198 a.a.
NCBI ID   WP_086367516.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain KC-Na-1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2574201..2584797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY62_RS12100 (CAY62_12090) panC 2574903..2575793 (+) 891 WP_086367512.1 pantoate--beta-alanine ligase -
  CAY62_RS12105 (CAY62_12095) - 2575909..2576679 (-) 771 WP_086367513.1 ABC transporter permease -
  CAY62_RS12110 (CAY62_12100) - 2576676..2577599 (-) 924 WP_086367514.1 ABC transporter ATP-binding protein -
  CAY62_RS12115 (CAY62_12105) can 2577698..2578369 (+) 672 WP_005297646.1 carbonate dehydratase -
  CAY62_RS12120 (CAY62_12110) hpt 2578444..2578980 (-) 537 WP_086367515.1 hypoxanthine phosphoribosyltransferase -
  CAY62_RS12125 (CAY62_12115) opaR 2579201..2579797 (+) 597 WP_086367516.1 TetR/AcrR family transcriptional regulator Regulator
  CAY62_RS12130 (CAY62_12120) - 2579871..2580908 (-) 1038 WP_086367854.1 ABC transporter ATP-binding protein -
  CAY62_RS12135 (CAY62_12125) - 2580911..2582536 (-) 1626 WP_086367517.1 iron ABC transporter permease -
  CAY62_RS12140 (CAY62_12130) - 2582693..2583706 (-) 1014 WP_065171762.1 Fe(3+) ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22796.08 Da        Isoelectric Point: 7.1177

>NTDB_id=228612 CAY62_RS12125 WP_086367516.1 2579201..2579797(+) (opaR) [Photobacterium damselae subsp. damselae strain KC-Na-1]
MDMVIKRTRTRLSPEKRREQLLNSALDVFARRGIGRGGHADIAEMANVSVATVFNYFPTREDLVEQVLIHVESRFNKLLT
HSLNDEMPTAKAKLTNLTDCLIKAVIEQHDWLKVWFEWSTSVRDDIWPLFIKTNKNNLQKLTAVFEQGLTAGEFSRSQSA
SDLAHMFHGTCYVLYLQTHLTLDPEIMQRQADSYLQSL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=228612 CAY62_RS12125 WP_086367516.1 2579201..2579797(+) (opaR) [Photobacterium damselae subsp. damselae strain KC-Na-1]
ATGGACATGGTGATTAAGCGTACTCGTACTCGCTTATCTCCAGAAAAACGTCGAGAGCAGCTACTCAATAGCGCACTAGA
TGTTTTTGCTCGTCGTGGTATTGGCCGAGGGGGCCACGCAGATATCGCAGAAATGGCAAATGTCTCTGTTGCGACCGTTT
TCAATTATTTTCCAACTCGCGAAGATTTAGTAGAACAGGTATTAATTCACGTTGAATCTCGTTTCAATAAACTACTGACA
CACTCTCTCAACGATGAAATGCCAACAGCAAAAGCCAAACTGACTAACCTTACCGATTGCTTAATTAAAGCTGTTATAGA
GCAGCACGATTGGCTAAAAGTCTGGTTTGAATGGAGTACATCAGTACGTGATGATATTTGGCCGCTGTTTATCAAAACCA
ATAAAAATAACTTACAAAAGTTAACCGCGGTTTTTGAACAGGGATTAACGGCTGGAGAATTTAGCCGCTCTCAATCTGCA
TCAGATTTAGCGCATATGTTTCACGGTACCTGTTATGTGCTGTACTTACAAACGCACCTAACCTTAGACCCTGAAATTAT
GCAGCGACAAGCTGATAGCTATTTACAGAGCCTGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

48.485

100

0.485
  hapR Vibrio cholerae C6706

48.241

100

0.485
  hapR Vibrio cholerae strain A1552

48.241

100

0.485

Multiple sequence alignment